Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00065 ATGCTTTCCATCCTCCTTATTCTGCTCCTTCTCAGATCAGCCACCGTTTTTGGTTTGAACCAAGAGGGTTTGTATCTGTACCAGTTCAAACTCTCACTGGACGATCCAGACTCTTCCCTCTCTTCATGGAACAACCGCGACCCCACCCCATGCAGCTGGACCGGAGTCACATGCGATCCCACCCACACCACCGTCACCGAACTAGACCTCTCCAACGCCAACCTCGCTGGCCCATTCTCTACTTCCATCCTCTGCCATCTCACCAACCTCACCTCTATCATCCTTTACAACAACGCCATCAACAACACTCTCTCTCTAGAAATCTCCCAATGCACCTCCCTCGTACACCTTGATCTCTCACAAAACCTCCTCACCGGTACACTCCCCCACACCCTATCCCACCTCTCCAACCTCCAATACCTCGACTTAACTGGCAATAATTTCTCCGGTCCCATTCCCGATTCCTTTGGCAGATTTCAGAATCTTAAGGTTCTCTCTCTTGTCTACAACCTTCTAGATCAAACTATACCAGCTTCTCTCGGCAACATCACCACCCTCAAAATGCTCAACCTCTCTTATAACCCTTTTCTCCCCCGTCCTATTCCACCGGAGCTCGGAAACCTCACAAACCTTGAAATCCTCTGGCTCAGCTCGTGTAATCTCGTTGGCGTTATCCCTCACTCGCTTGGGAATCTCAGAAAGCTCAGGGACTTGGACCTCGCATTGAACAACCTCTGCGGAGCCATTCCGAGTTCGCTGACTCAGATGACGAGTTTAAAACAGATTGAGTTGTATAACAACTCGTTGTCCGGTGAGTTGCCTCGGGGAATGTCGAACCTCACATCATTGAGGCTTGTTGACATGTCCATGAACCATCTCAGTGGAGCTATTCACGACGAGTTGTGCCGCTTGCCGCTGGAGAGTCTTAATCTCTACGAGAATCTTTTCGAAGGCGAGTTGCCGGCGAGTATAGCTGACTCGCCTAACCTCTATGAACTCAGGTTGTTCGGGAACAGACTCGCCGGCAAGTTGCCGGAAAATCTTGGGAAGAATGCTCCGTTGAGGTGGCTTGACGTTTCTAACAACCTGTTCTGGGGTCGAATTCCGGCGACTCTGTGCGACCGTGGCGCGTTGGAGGAGATTCTGATGATATACAACTCGTTCTCCGGGGAGATTCCGGCGAGTTTGGGCGCGTGCCGGAGCTTGACGCGTGTCAGGTTAGGTTTCAACCGGTTGTCCGGCGAAGTTCCGGCGGGTATGTGGAGGCTTCCCCATGTGTATTTGCTTGAACTTGTTGACAACTCGTTTTCAGGTTCAATCGCGAGTACCATTGGTGGGGCGGGGAATTTATCGTTGTTGATTGTGTCGAAGAACAATTTCTCGGGAGCAATCCCCGACGAGATTGGATGGTTGAAAAATCTTCAGGAATTTTCGGGTGGTGATAACAAATTCAATGGTTCGCTGCCTGAGAGTATTGGGAATCTTGGGCAGCTTGGGACTCTCGATCTCCATAACAATAAGCTCACTGGGGAGCTTCCCAAGGGGATTCAATCCTGGAAGAAACTCAACGAGTTGAATTTGGCTAATAATAATATTGGTGGGAAAATTCCTAATGAAATTGGGAGTTTATCGGTGCTTAATTTTCTTGATCTTTCCAATAACCAATTTTCCGGGAAAATCCCCCTGGGGTTGCAGAATTTGAAGCTCAATCAGCTCAATTTATCTTATAATCGGCTTTCTGGAGACCTTCCCCCTCTCTTGGCTAAGGATATGTACATGGCTAGTTTTCTGGGAAATCCCGGTTTATGTGGGGATGTGAAAGGTCTATGTGATGTCAAAGGTGAGAAAAAGAGTGCAGGTTTTGTTTGGTTGCTTCGAACTATTCTCGTAGTTGCCACTTTGGTGTTTGCCATCGGTGTGGTATGGTTCTACTTCAAGTATAGGAATTTGAAGAGTGCTAGAAGATCTATTGATAAATCGAAGTGGACATTGATGTCTTTTCATAAACTGGGTTTTGGTGAAGATGAGATCCTGAACTGCCTCGATGAAGATAATGTGGTAGGAAGTGGATCATCGGGGAAAGTCTACAAGGTTGTACTTAGCAGTGGGGAAGCTGTTGCAGTGAAGAAGATATGGGGAGGGATAAAAAAGGAAATAGAGAGTGGAGATATTGAAAAGGCTCGATTTCAAGACAATGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTCAAGCTATGGTGTTGCTGCACCACTAGGGACTGCAAACTATTAGTTTATGAGTATATGCCAAATGGTAGTCTTGGTGATTTGCTGCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGTTGTTGATGCTGCAGAAGGCCTCTCTTATCTGCATCACGACTGTGTTCCCTCTATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGACTTTGGTGCAAGGGTGGCAGATTTTGGAGTAGCTAAGGTAGTGGAATCCACCGGAAAAGTAACTAAATCCATGTCGGTCATAGCTGGTTCCTGTGGGTATATCGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATCTATAGTTTTGGTGTTGTCATACTTGAGTTGGTTACTGGAAAGCGGCCTATAGACCCTGAATTTGGGGATAAAGACTTGGTTATGTGGACGTGCACCACCTTGGATCAGAAAGGCGTGGACCATGTGCTTGACTCCAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTTCTTAACATTGGTCTCATGTGCACTAGTCCTCTTCCAATCAACCGGCCTGCAATGAGAAGAGTCGTGAAAATGTTACAAGAGGTGGGCACAGAGAACCAAACAAAGCCTGCCAAGAAAGATGGAAAGTTGTCCCCTTATTACTATGATGATGGGTCAGATCATGGAAGTGTTGCTTAA 2985 0.4667 MLSILLILLLLRSATVFGLNQEGLYLYQFKLSLDDPDSSLSSWNNRDPTPCSWTGVTCDPTHTTVTELDLSNANLAGPFSTSILCHLTNLTSIILYNNAINNTLSLEISQCTSLVHLDLSQNLLTGTLPHTLSHLSNLQYLDLTGNNFSGPIPDSFGRFQNLKVLSLVYNLLDQTIPASLGNITTLKMLNLSYNPFLPRPIPPELGNLTNLEILWLSSCNLVGVIPHSLGNLRKLRDLDLALNNLCGAIPSSLTQMTSLKQIELYNNSLSGELPRGMSNLTSLRLVDMSMNHLSGAIHDELCRLPLESLNLYENLFEGELPASIADSPNLYELRLFGNRLAGKLPENLGKNAPLRWLDVSNNLFWGRIPATLCDRGALEEILMIYNSFSGEIPASLGACRSLTRVRLGFNRLSGEVPAGMWRLPHVYLLELVDNSFSGSIASTIGGAGNLSLLIVSKNNFSGAIPDEIGWLKNLQEFSGGDNKFNGSLPESIGNLGQLGTLDLHNNKLTGELPKGIQSWKKLNELNLANNNIGGKIPNEIGSLSVLNFLDLSNNQFSGKIPLGLQNLKLNQLNLSYNRLSGDLPPLLAKDMYMASFLGNPGLCGDVKGLCDVKGEKKSAGFVWLLRTILVVATLVFAIGVVWFYFKYRNLKSARRSIDKSKWTLMSFHKLGFGEDEILNCLDEDNVVGSGSSGKVYKVVLSSGEAVAVKKIWGGIKKEIESGDIEKARFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIVVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKVVESTGKVTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPIDPEFGDKDLVMWTCTTLDQKGVDHVLDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDGSDHGSVA 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00065 994 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Gabi4083g00065 994 Pfam Leucine Rich Repeat 210 232 IPR001611 GO:0005515
Gabi4083g00065 994 FunFam Leucine-rich receptor-like protein kinase family protein 201 299 - -
Gabi4083g00065 994 Gene3D Ribonuclease Inhibitor 175 273 IPR032675 -
Gabi4083g00065 994 Gene3D Ribonuclease Inhibitor 19 174 IPR032675 -
Gabi4083g00065 994 Gene3D Ribonuclease Inhibitor 274 376 IPR032675 -
Gabi4083g00065 994 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 769 978 - -
Gabi4083g00065 994 Gene3D Ribonuclease Inhibitor 377 610 IPR032675 -
Gabi4083g00065 994 ProSiteProfiles Leucine-rich repeat profile. 568 590 IPR001611 GO:0005515
Gabi4083g00065 994 SUPERFAMILY L domain-like 307 585 - -
Gabi4083g00065 994 Gene3D Transferase(Phosphotransferase) domain 1 769 986 - -
Gabi4083g00065 994 MobiDBLite consensus disorder prediction 965 994 - -
Gabi4083g00065 994 SMART LRR_typ_2 232 256 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 280 304 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 135 158 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 112 134 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 159 183 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 543 566 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 87 111 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 208 231 IPR003591 -
Gabi4083g00065 994 SMART LRR_typ_2 495 518 IPR003591 -
Gabi4083g00065 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Gabi4083g00065 994 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515
Gabi4083g00065 994 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515
Gabi4083g00065 994 SUPERFAMILY Protein kinase-like (PK-like) 677 961 IPR011009 -
Gabi4083g00065 994 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 186 963 - -
Gabi4083g00065 994 FunFam Receptor-like protein kinase HSL1 665 768 - -
Gabi4083g00065 994 SMART serkin_6 681 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00065 994 Pfam Protein kinase domain 683 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00065 994 SUPERFAMILY L domain-like 34 369 - -
Gabi4083g00065 994 MobiDBLite consensus disorder prediction 969 983 - -
Gabi4083g00065 994 ProSiteProfiles Protein kinase domain profile. 681 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00065 994 Gene3D Phosphorylase Kinase; domain 1 665 768 - -
Gabi4083g00065 994 FunFam Receptor-like protein kinase HSL1 305 612 - -
Gabi4083g00065 994 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 183 - -
Gabi4083g00065 994 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00065 Gabi-Chr4083 485196 489084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00065 15 994 Receptor kinase-like Gene Family AT1G28440 70.517 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4083g00065 Pkinase 9.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00065 - - gmx:100776936 1635.54