Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00055 ATGGGGATGGATTACTATGAGATATTGGAGGTTGACAAGAATGCAACAGATGAAGAGTTGAAGAAAGCTTACAGAAAACTTGCTATGAAATGGCACCCTGATAAGAACCCTAACAATAACAAAGACGCCGAGACTAAATTCAAACAGATTTCCGAAGCCTATGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCGGTATGGAGAAGGTGGCCTTAAAGGTGGAATGTCATCACCGGATGCTGGTGGGGCTTCATTCTTCAGGACTGGAGATGGTCCAACAGTGTTTAGGTTCAATCCCAGAAATGCAAACACTATTTTTGCAGAAGTTTTTGGCTGTTGTAGCCCATTTGGAGGAATGGGAATGGGAATGGGAGTTGGTGTAGTTGGGTTTAGGAAAACTTTGCCAGTGGAGGAAATCTTAACCATTGAAATCCAACCAGGCTGGAAAAACGGAACAAAAATCACTTTCCTGGAGAAAGGAAATGAGCAGCCAAATGTTATTGCCGCAGATCTTGTGTTTATTATTGATGAGAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGACACACAAGGTATCACTTGCAGAAGCTGAAGCTCTAACAGGCTCCACCATCCAACTTACAGCACTAGATGGCAGGGCTCTGACAATTGTCGTAAACAATGTGATTGATCCAAACTATGAAGAAGTGATTTCCGGGGAAGGTATGCCAATCTCCAAAGATCCTTCAAAGAGGGGTAACCTTAGGATCAAATTCAACATCGAATTCCCAAACATGGTTTAG 804 0.4216 MGMDYYEILEVDKNATDEELKKAYRKLAMKWHPDKNPNNNKDAETKFKQISEAYEVLSDPQKRAIYDRYGEGGLKGGMSSPDAGGASFFRTGDGPTVFRFNPRNANTIFAEVFGCCSPFGGMGMGMGVGVVGFRKTLPVEEILTIEIQPGWKNGTKITFLEKGNEQPNVIAADLVFIIDEKPHSVFTRDGNDLVVTHKVSLAEAEALTGSTIQLTALDGRALTIVVNNVIDPNYEEVISGEGMPISKDPSKRGNLRIKFNIEFPNMV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00055 267 FunFam DnaJ subfamily B member 13 183 265 - -
Gabi4083g00055 267 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4083g00055 267 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 265 IPR008971 GO:0006457|GO:0051082
Gabi4083g00055 267 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4083g00055 267 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4083g00055 267 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4083g00055 267 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4083g00055 267 CDD DnaJ 4 59 IPR001623 -
Gabi4083g00055 267 Gene3D - 118 182 - -
Gabi4083g00055 267 Pfam DnaJ C terminal domain 140 264 IPR002939 -
Gabi4083g00055 267 CDD DnaJ_C 139 264 - -
Gabi4083g00055 267 SUPERFAMILY Chaperone J-domain 3 100 IPR036869 -
Gabi4083g00055 267 SMART dnaj_3 3 62 IPR001623 -
Gabi4083g00055 267 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4083g00055 267 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 138 265 - -
Gabi4083g00055 267 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4083g00055 267 SUPERFAMILY HSP40/DnaJ peptide-binding domain 135 194 IPR008971 GO:0006457|GO:0051082
Gabi4083g00055 267 Gene3D DnaJ domain 2 117 IPR036869 -
Gabi4083g00055 267 FunFam DnaJ subfamily B member 13 3 123 - -
Gabi4083g00055 267 Coils Coil 6 26 - -
Gabi4083g00055 267 Gene3D - 183 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00055 Gabi-Chr4083 420885 423536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00055 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 3.39e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00055 K09510 - gmx:100775897 378.637