Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00054 ATGGGGATGGATTACTATGAGATATTGGAGGTTGACAAGAATGCAACAGATGAAGAGTTGAAGAAAGCTTACAGAAAACTTGCTATGAAATGGCACCCTGATAAGAACCCTAACAATAACAAAGACGCCGAGACTAAATTCAAACAGATTTCCGAAGCCTATGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCGGTATGGAGAAGGTGGCCTTAAAGGTGGAATGTCATCACCGGATGCTGGTGGGGCTTCATTCTTCAGGACTGGAGATGGTCCAACAGTGTTTAGGTTCAATCCCAGAAATGCAAACACTATTTTTGCAGAAGTTTTTGGCTGTTGTAGCCCATTTGGAGGAATGGGAATGGGAATGGGAGTTGGTGGTTGTGGCAGAGGCATGAGGGGTAGGTCATGGGTGTCAAGGTCCTTTGGTGGAATGTTTAGGGAAGACATGTTTGGAGAAGGGAGACCCATGAGTCAAGTGGAGGAAATCTTAACCATTGAAATCCAACCAGGCTGGAAAAACGGAACAAAAATCACTTTCCTGGAGAAAGGAAATGAGCAGCCAAATGTTATTGCCGCAGATCTTGTGTTTATTATTGATGAGAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGACACACAAGGTATCACTTGCAGAAGCTGAAGCTCTAACAGGCTCCACCATCCAACTTACAGCACTAGATGGCAGGGCTCTGACAATTGTCGTAAACAATGTGATTGATCCAAACTATGAAGAAGTGATTTCCGGGGAAGGTATGCCAATCTCCAAAGATCCTTCAAAGAGGGGTAACCTTAGGATCAAATTCAACATCGAATTCCCAAACATGGTTTAG 876 0.4326 MGMDYYEILEVDKNATDEELKKAYRKLAMKWHPDKNPNNNKDAETKFKQISEAYEVLSDPQKRAIYDRYGEGGLKGGMSSPDAGGASFFRTGDGPTVFRFNPRNANTIFAEVFGCCSPFGGMGMGMGVGGCGRGMRGRSWVSRSFGGMFREDMFGEGRPMSQVEEILTIEIQPGWKNGTKITFLEKGNEQPNVIAADLVFIIDEKPHSVFTRDGNDLVVTHKVSLAEAEALTGSTIQLTALDGRALTIVVNNVIDPNYEEVISGEGMPISKDPSKRGNLRIKFNIEFPNMV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00054 291 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4083g00054 291 Gene3D - 128 206 - -
Gabi4083g00054 291 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4083g00054 291 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4083g00054 291 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4083g00054 291 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4083g00054 291 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 289 - -
Gabi4083g00054 291 CDD DnaJ 4 59 IPR001623 -
Gabi4083g00054 291 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 218 IPR008971 GO:0006457|GO:0051082
Gabi4083g00054 291 Pfam DnaJ C terminal domain 153 288 IPR002939 -
Gabi4083g00054 291 SUPERFAMILY HSP40/DnaJ peptide-binding domain 209 289 IPR008971 GO:0006457|GO:0051082
Gabi4083g00054 291 SMART dnaj_3 3 62 IPR001623 -
Gabi4083g00054 291 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4083g00054 291 Gene3D - 207 289 - -
Gabi4083g00054 291 FunFam DnaJ subfamily B member 13 207 289 - -
Gabi4083g00054 291 SUPERFAMILY Chaperone J-domain 3 100 IPR036869 -
Gabi4083g00054 291 Coils Coil 6 26 - -
Gabi4083g00054 291 FunFam DnaJ subfamily B member 13 3 123 - -
Gabi4083g00054 291 CDD DnaJ_C 162 288 - -
Gabi4083g00054 291 Gene3D DnaJ domain 2 121 IPR036869 -
Gabi4083g00054 291 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00054 Gabi-Chr4083 420885 423536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00054 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 4.06e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00054 K09510 - gmx:100794650 446.047