Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00053 ATGGGGATGGATTACTATGAGATATTGGAGGTTGACAAGAATGCAACAGATGAAGAGTTGAAGAAAGCTTACAGAAAACTTGCTATGAAATGGCACCCTGATAAGAACCCTAACAATAACAAAGACGCCGAGACTAAATTCAAACAGATTTCCGAAGCCTATGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCGGTATGGAGAAGGTGGCCTTAAAGGTGGAATGTCATCACCGGATGCTGGTGGGGCTTCATTCTTCAGGACTGGAGATGGTCCAACAGTGTTTAGGTTCAATCCCAGAAATGCAAACACTATTTTTGCAGAAGTTTTTGGCTGTTGTAGCCCATTTGGAGGAATGGGAATGGGAATGGGAGTTGGTGGTTGTGGCAGAGGCATGAGGGGTAGGTCATGGGTGTCAAGGTCCTTTGGTGGAATGTTTAGGGAAGACATGTTTGGAGAAGGGAGACCCATGAGTCAAGGTCCGCGATGCAAGGCACCTCCCATTGAAAATACATTACCTTGCAGCCTTGAGGAACTCTATAAGGGGACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCATATGCAAGCGGGAAAACTTTGCCAGTGGAGGAAATCTTAACCATTGAAATCCAACCAGGCTGGAAAAACGGAACAAAAATCACTTTCCTGGAGAAAGGAAATGAGCAGCCAAATGTTATTGCCGCAGATCTTGTGTTTATTATTGATGAGAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGACACACAAGGTATCACTTGCAGAAGCTGAAGCTCTAACAGGCTCCACCATCCAACTTACAGCACTAGATGGCAGGGCTCTGACAATTGTCGTAAACAATGTGATTGATCCAAACTATGAAGAAGTGATTTCCGGGGAAGGTATGCCAATCTCCAAAGATCCTTCAAAGAGGGGTAACCTTAGGATCAAATTCAACATCGAATTCCCAAACATGGTTTAG 1005 0.4358 MGMDYYEILEVDKNATDEELKKAYRKLAMKWHPDKNPNNNKDAETKFKQISEAYEVLSDPQKRAIYDRYGEGGLKGGMSSPDAGGASFFRTGDGPTVFRFNPRNANTIFAEVFGCCSPFGGMGMGMGVGGCGRGMRGRSWVSRSFGGMFREDMFGEGRPMSQGPRCKAPPIENTLPCSLEELYKGTTKKMKISREIAYASGKTLPVEEILTIEIQPGWKNGTKITFLEKGNEQPNVIAADLVFIIDEKPHSVFTRDGNDLVVTHKVSLAEAEALTGSTIQLTALDGRALTIVVNNVIDPNYEEVISGEGMPISKDPSKRGNLRIKFNIEFPNMV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00053 334 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4083g00053 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 332 - -
Gabi4083g00053 334 CDD DnaJ_C 169 331 - -
Gabi4083g00053 334 CDD DnaJ 4 59 IPR001623 -
Gabi4083g00053 334 FunFam Dnaj homolog subfamily b member 167 248 - -
Gabi4083g00053 334 Pfam DnaJ C terminal domain 171 331 IPR002939 -
Gabi4083g00053 334 SUPERFAMILY Chaperone J-domain 3 100 IPR036869 -
Gabi4083g00053 334 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4083g00053 334 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4083g00053 334 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4083g00053 334 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4083g00053 334 Gene3D - 170 248 - -
Gabi4083g00053 334 Gene3D DnaJ domain 2 121 IPR036869 -
Gabi4083g00053 334 SMART dnaj_3 3 62 IPR001623 -
Gabi4083g00053 334 FunFam DnaJ subfamily B member 13 250 332 - -
Gabi4083g00053 334 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4083g00053 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 166 261 IPR008971 GO:0006457|GO:0051082
Gabi4083g00053 334 Gene3D - 250 332 - -
Gabi4083g00053 334 FunFam DnaJ subfamily B member 13 3 123 - -
Gabi4083g00053 334 Coils Coil 6 26 - -
Gabi4083g00053 334 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4083g00053 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 332 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00053 Gabi-Chr4083 420885 423536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00053 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 7.38e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00053 K09510 - gmx:100794650 531.176