Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00052 ATGGGCGTGGACTACTACAAGATTTTGCAGGTCGACAAGAATGCCAAGGATGAAGATTTAAAGAAAGCTTACAGAAAGCTTGCCATGAAATGGCACCCTGACAAGAACCAAAACAATAAGCAAGAGGCTGAGACTAAATTCAAACAGATATCTGAAGCCTATGAGGTTCTAAGTGATCCCCAAAAGAGAGCAATTTATGATCGGTACGGAGAAGAAGGCCTTAAGGGCCAAATGCCACCTCCAGATGCTGGTGGGGCTTCATTCTTCCACACTGGAGATGGCCCAACAACGTTCAGGTTCAATCCCAGAAATGCTGACGACATTTTTTCTGAATTTTTTGGGTTTTCAAGCCCATTTGGAGGAATGGGAGGAGGTGGTGGTGGGAGTGGCATGATGGGTGGGTCAAGGTCCTTTGGTGGAATTTTTGACGATGATATATTCAGCTCATTTGGAGAAGGCAGGCCCATGAATCGGGTTCCCCGTAAGGCACCTCCTATCGAAAAAACATTACCTTGCAGCCTTGAGGAACTCTATATGGGCACTACCAAAAAGATGAAGATCTCAAGGGAACTTGCAGATGCAAGCGGGAAAACTTTGTCAGTGGAGGAAATCTTAACCATTGAAATTAAACCCGGATGGAAAAAGGGGACAAAAATCACATTCCCAGAGAAAGGAAATGAGCAACCAAATGTTATTGCTGCGGATCTTGTGTTTGTTATTGATGAGAAGCCTCACAGTGTGTTTACAAGGGATGGTAATGATTTGGTTGTGACACAAAAGGTATCACTTGCTGAAGCACTAACAGGCTATACTGTTCGTCTTACAACTCTAGATGGCAGGGTTTTGACCATTCCTATAAGCAATGTGATTCATCCAAACTATGAAGAGGTTGTCCCTAAGGAAGGTATGCCAATTGCAAAAGATCCTTCAAAGAGGGGTAATCTTAGGATCAAATTCAACATTAAATTTCCAACAAGGTTGACCTCAGAGCAGAAAGCCGGAATTAAGAAACTTCTGTCGCCATAA 1026 0.4327 MGVDYYKILQVDKNAKDEDLKKAYRKLAMKWHPDKNQNNKQEAETKFKQISEAYEVLSDPQKRAIYDRYGEEGLKGQMPPPDAGGASFFHTGDGPTTFRFNPRNADDIFSEFFGFSSPFGGMGGGGGGSGMMGGSRSFGGIFDDDIFSSFGEGRPMNRVPRKAPPIEKTLPCSLEELYMGTTKKMKISRELADASGKTLSVEEILTIEIKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHSVFTRDGNDLVVTQKVSLAEALTGYTVRLTTLDGRVLTIPISNVIHPNYEEVVPKEGMPIAKDPSKRGNLRIKFNIKFPTRLTSEQKAGIKKLLSP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00052 341 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4083g00052 341 Gene3D - 245 325 - -
Gabi4083g00052 341 CDD DnaJ 4 59 IPR001623 -
Gabi4083g00052 341 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4083g00052 341 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4083g00052 341 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4083g00052 341 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4083g00052 341 FunFam Dnaj homolog subfamily b member 162 243 - -
Gabi4083g00052 341 CDD DnaJ_C 164 327 - -
Gabi4083g00052 341 SUPERFAMILY Chaperone J-domain 3 128 IPR036869 -
Gabi4083g00052 341 Gene3D DnaJ domain 3 123 IPR036869 -
Gabi4083g00052 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 159 252 IPR008971 GO:0006457|GO:0051082
Gabi4083g00052 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 247 333 IPR008971 GO:0006457|GO:0051082
Gabi4083g00052 341 Gene3D - 165 243 - -
Gabi4083g00052 341 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 339 - -
Gabi4083g00052 341 FunFam DnaJ subfamily B member 13 245 325 - -
Gabi4083g00052 341 FunFam DnaJ subfamily B member 13 3 123 - -
Gabi4083g00052 341 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4083g00052 341 Pfam DnaJ C terminal domain 166 324 IPR002939 -
Gabi4083g00052 341 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4083g00052 341 SMART dnaj_3 3 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00052 Gabi-Chr4083 416225 418394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00052 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 3.03e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00052 K09510 - tcc:18596788 568.155