Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00050 ATGGGCGTGGACTACTACAAGATTTTGCAGGTCGACAAGAATGCCAAGGATGAAGATTTAAAGAAAGCTTACAGAAAGCTTGCCATGAAATGGCACCCTGACAAGAACCAAAACAATAAGCAAGAGGCTGAGACTAAATTCAAACAGATATCTGAAGCCTATGAGGTTCTAAGTGATCCCCAAAAGAGAGCAATTTATGATCGGTACGGAGAAGAAGGCCTTAAGGGCCAAATGCCACCTCCAGATGCTGGTGGGGCTTCATTCTTCCACACTGGAGATGGCCCAACAACGTTCAGGTTCAATCCCAGAAATGCTGACGACATTTTTTCTGAATTTTTTGGGTTTTCAAGCCCATTTGGAGGAATGGGAGGAGGTGGTGGTGGGAGTGGCATGATGGGTGGGTCAAGGAAAACTTTGTCAGTGGAGGAAATCTTAACCATTGAAATTAAACCCGGATGGAAAAAGGGGACAAAAATCACATTCCCAGAGAAAGGAAATGAGCAACCAAATGTTATTGCTGCGGATCTTGTGTTTGTTATTGATGAGAAGCCTCACAGTGTGTTTACAAGGGATGGTAATGATTTGGTTGTGACACAAAAGGTATCACTTGCTGAAGCACTAACAGGCTATACTGTTCGTCTTACAACTCTAGATGGCAGGGTTTTGACCATTCCTATAAGCAATGTGATTCATCCAAACTATGAAGAGGTTGTCCCTAAGGAAGGTATGCCAATTGCAAAAGATCCTTCAAAGAGGGGTAATCTTAGGATCAAATTCAACATTAAATTTCCAACAAGGTTGACCTCAGAGCAGAAAGCCGGAATTAAGAAACTTCTGTCGCCATAA 846 0.4267 MGVDYYKILQVDKNAKDEDLKKAYRKLAMKWHPDKNQNNKQEAETKFKQISEAYEVLSDPQKRAIYDRYGEEGLKGQMPPPDAGGASFFHTGDGPTTFRFNPRNADDIFSEFFGFSSPFGGMGGGGGGSGMMGGSRKTLSVEEILTIEIKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHSVFTRDGNDLVVTQKVSLAEALTGYTVRLTTLDGRVLTIPISNVIHPNYEEVVPKEGMPIAKDPSKRGNLRIKFNIKFPTRLTSEQKAGIKKLLSP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00050 281 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4083g00050 281 Gene3D - 128 183 - -
Gabi4083g00050 281 Pfam DnaJ C terminal domain 140 264 IPR002939 -
Gabi4083g00050 281 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 138 279 - -
Gabi4083g00050 281 FunFam DnaJ subfamily B member 13 185 265 - -
Gabi4083g00050 281 CDD DnaJ 4 59 IPR001623 -
Gabi4083g00050 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 141 185 IPR008971 GO:0006457|GO:0051082
Gabi4083g00050 281 CDD DnaJ_C 141 267 - -
Gabi4083g00050 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 187 273 IPR008971 GO:0006457|GO:0051082
Gabi4083g00050 281 FunFam DnaJ subfamily B member 13 3 123 - -
Gabi4083g00050 281 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4083g00050 281 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4083g00050 281 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4083g00050 281 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4083g00050 281 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4083g00050 281 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4083g00050 281 SMART dnaj_3 3 62 IPR001623 -
Gabi4083g00050 281 SUPERFAMILY Chaperone J-domain 3 128 IPR036869 -
Gabi4083g00050 281 Gene3D - 185 265 - -
Gabi4083g00050 281 Gene3D DnaJ domain 3 122 IPR036869 -
Gabi4083g00050 281 FunFam Dnaj homolog subfamily b member 130 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00050 Gabi-Chr4083 416223 418394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00050 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.71e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00050 K09510 - fve:101312363 420.239