Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00049 ATGGGCGTGGACTACTACAAGATTTTGCAGGTCGACAAGAATGCCAAGGATGAAGATTTAAAGAAAGCTTACAGAAAGCTTGCCATGAAATGGCACCCTGACAAGAACCAAAACAATAAGCAAGAGGCTGAGACTAAATTCAAACAGATATCTGAAGCCTATGAGGTTCTAAGTGATCCCCAAAAGAGAGCAATTTATGATCGGTACGGAGAAGAAGGCCTTAAGGGCCAAATGCCACCTCCAGATGCTGGTGGGGCTTCATTCTTCCACACTGGAGATGGCCCAACAACGTTCAGGTTCAATCCCAGAAATGCTGACGACATTTTTTCTGAATTTTTTGGGTTTTCAAGCCCATTTGGAGGAATGGGAGGAGGTGGTGGTGGGAGTGGCATGATGGGTGGGTCAAGGTCCTTTGGTGGAATTTTTGACGATGATATATTCAGCTCATTTGGAGAAGGCAGGAAAACTTTGTCAGTGGAGGAAATCTTAACCATTGAAATTAAACCCGGATGGAAAAAGGGGACAAAAATCACATTCCCAGAGAAAGGAAATGAGCAACCAAATGTTATTGCTGCGGATCTTGTGTTTGTTATTGATGAGAAGCCTCACAGTGTGTTTACAAGGGATGGTAATGATTTGGTTGTGACACAAAAGGTATCACTTGCTGAAGCACTAACAGGCTATACTGTTCGTCTTACAACTCTAGATGGCAGGGTTTTGACCATTCCTATAAGCAATGTGATTCATCCAAACTATGAAGAGGTTGTCCCTAAGGAAGGTATGCCAATTGCAAAAGATCCTTCAAAGAGGGGTAATCTTAGGATCAAATTCAACATTAAATTTCCAACAAGGTTGACCTCAGAGCAGAAAGCCGGAATTAAGAAACTTCTGTCGCCATAA 900 0.4256 MGVDYYKILQVDKNAKDEDLKKAYRKLAMKWHPDKNQNNKQEAETKFKQISEAYEVLSDPQKRAIYDRYGEEGLKGQMPPPDAGGASFFHTGDGPTTFRFNPRNADDIFSEFFGFSSPFGGMGGGGGGSGMMGGSRSFGGIFDDDIFSSFGEGRKTLSVEEILTIEIKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHSVFTRDGNDLVVTQKVSLAEALTGYTVRLTTLDGRVLTIPISNVIHPNYEEVVPKEGMPIAKDPSKRGNLRIKFNIKFPTRLTSEQKAGIKKLLSP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00049 299 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 153 297 - -
Gabi4083g00049 299 SUPERFAMILY HSP40/DnaJ peptide-binding domain 155 213 IPR008971 GO:0006457|GO:0051082
Gabi4083g00049 299 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4083g00049 299 CDD DnaJ_C 159 285 - -
Gabi4083g00049 299 CDD DnaJ 4 59 IPR001623 -
Gabi4083g00049 299 Gene3D DnaJ domain 3 123 IPR036869 -
Gabi4083g00049 299 Gene3D - 140 202 - -
Gabi4083g00049 299 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4083g00049 299 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4083g00049 299 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4083g00049 299 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4083g00049 299 SUPERFAMILY HSP40/DnaJ peptide-binding domain 205 291 IPR008971 GO:0006457|GO:0051082
Gabi4083g00049 299 SUPERFAMILY Chaperone J-domain 3 128 IPR036869 -
Gabi4083g00049 299 FunFam DnaJ subfamily B member 13 203 283 - -
Gabi4083g00049 299 Gene3D - 203 283 - -
Gabi4083g00049 299 Pfam DnaJ C terminal domain 158 282 IPR002939 -
Gabi4083g00049 299 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4083g00049 299 FunFam Dnaj homolog subfamily b member 147 201 - -
Gabi4083g00049 299 FunFam DnaJ subfamily B member 13 3 123 - -
Gabi4083g00049 299 SMART dnaj_3 3 62 IPR001623 -
Gabi4083g00049 299 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00049 Gabi-Chr4083 416222 418394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00049 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.80e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00049 K09510 - tcc:18596788 474.552