Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00032 ATGTCTCTCCCAAATTCTCCCACAGCCTCCCATGATGAAATCGATCCATCCTTTCAAGAAGAAGAAGAAGAGGAGATAGAAGACCCTGAGGAAGAAGTGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGAGGGAGAGGAAGGGGAAGAAGAAGAAGAAGAGGGAGAGGAAGAGGAAGAGGAAGAGGTAAAAGTGAAGGAGGAGGTAGGATTGGTAGAAGAAGAGGAGGAGGATGTAGAAGAAGAGTTGGAGGAGGTAGAAGAGGAGGAGGAGGAGGAGGAGGTAGAAGAAGAGATGGAGGAGGTAGAAGTGGAAGAAGAGGAGGATGAGGTAGAAGAAGAAGCAGCAGCAGTAGAAGAGGAGGTAGAAGAAGAACCAATGGAGGAGGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGTGGAGGAGGAGGACAAAAGGGCAGTGACAGATTCTCCACCCAATGTGGATAACAATCGCAAAGATTCCAGCCAACATATGGGGTCTGAGGAGCAAGACGAGAACGTGGGGCCAGTTTCATCTATTGTAGAAAAACCTGAACAAGTGTCACAATCTACTTTGCATGACATGGAAAAGAATGATGCCATGGTCATAGCATCTGTTCCTTCATACGATGGTGGCCAGAATTATAGGAACGAAATCAAGCAGCCGGGAGTAGAGTTAAAGGATGATGTGAAACAAATGACATCAAGGAGGACTAGAAGTCTGTCTCCTGGTGCCGAGATTGAAGATCAAAACAAACGGCCGAAAATTATATGTGATTTTTTTGCCAAAGGTTGGTGTATAAGAGGAAGTTCCTGTAGTTTTCTTCATATAAAAGATACTGTGAATAATTTTGACCAGCAGGCTGAAGGAGACTTAGTAACTGCACATCAAAAGAGAGAATTGAAATCGGAAGAAGGTGTTAGGGAAAATGTTGAGAGATCGAGGATGAATGAGCAAGAAGCAAACCCAAGTTGGCATCTATCTCAAGAAAAACAGAAGTTTCCAGAGAATAGATTTGCATTTAACGCATCAAACAATTATTTCAGCCCAAATCTCTCTTCGTATTCAACCCGTGCTGAGGGAATGGCCACCATTCGAAACAAACATATGCACAAAGGATATACTTCTGCAGTTTTGAGTCATTCACCGAATTCAAGTGTGGTTACTCAATTTCCAGCTCCAAGCATGTCACTGTCCCACCGGATTTTAGCCCAATCAGGATGTTCATTGCCTTTTAGTTCCTCTCTAGGTGCAACTACTTTAGGTGACAAAGAATATCATGCCCCTACGTCCACTTTCTCTGGTTCAGAGCGGGAAGATTTGCCGCTAGTTAGTTCATCCAGGGTTCCACTGCATTCTACTGGATATAAATCAAAAATCCGTACTTATAATTGGGAACCTTCTGTACCATTTAAACCATCATTTTTTATTACTTCTATGAGTGTATCATCCCCTGGAGATCTTTATGATCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAAGCTTCCCTTTTAATTCAAGGATCATCTATCCAGGCTTCACCACAGGTGCGGACATATGGTGATTCTGCTGTAGTTGGGAAACACAAGTCTGATCTTAATGATGCCAAAAGTTCTGTATCTTCTCATAATAGATTTTATGAAAATGAGCCAAACAAAAGTTGTGTTCCTCGTGAAAAAGATTGTCTTGCAACTGAAACAGAGATAACATCAGGAACTTATGTAAACTATCTAGATGGTAAAGTGGGCGTCGGACAAGATTTTACAAAAACAGAGAAAGAGCGTGATGCTAGATATCATGGCCAAGGATCAGGGCACAAAAAGAAGAGAGTAGATAAGGATAAGAAAATTCATGAAATGGATGTTGACTTTCAGACGGATGGCAACGTGCAGAAAGAACCGAAGACATTAAGAAATTTCCGTGCGTGTCTTGTTGATTTGGTGAAAGAGTTGTTAAAACCATCTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATGTTATGATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACCCTAGAGCCCCAGCAGATTCCGACCACCATAGATGCTGCTAAGCAATATGTTTCTTCATGTCGGGGGAAAATTGCAAAGCTGGTCAACGGATATGTCAATAAATATGGCAAATCTTGA 2208 0.4212 MSLPNSPTASHDEIDPSFQEEEEEEIEDPEEEVEEEEEEEEEEEEEGEEGEEEEEEGEEEEEEEVKVKEEVGLVEEEEEDVEEELEEVEEEEEEEEVEEEMEEVEVEEEEDEVEEEAAAVEEEVEEEPMEEEVEEEEEEEEEEEEEEEEVEEEDKRAVTDSPPNVDNNRKDSSQHMGSEEQDENVGPVSSIVEKPEQVSQSTLHDMEKNDAMVIASVPSYDGGQNYRNEIKQPGVELKDDVKQMTSRRTRSLSPGAEIEDQNKRPKIICDFFAKGWCIRGSSCSFLHIKDTVNNFDQQAEGDLVTAHQKRELKSEEGVRENVERSRMNEQEANPSWHLSQEKQKFPENRFAFNASNNYFSPNLSSYSTRAEGMATIRNKHMHKGYTSAVLSHSPNSSVVTQFPAPSMSLSHRILAQSGCSLPFSSSLGATTLGDKEYHAPTSTFSGSEREDLPLVSSSRVPLHSTGYKSKIRTYNWEPSVPFKPSFFITSMSVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSSIQASPQVRTYGDSAVVGKHKSDLNDAKSSVSSHNRFYENEPNKSCVPREKDCLATETEITSGTYVNYLDGKVGVGQDFTKTEKERDARYHGQGSGHKKKRVDKDKKIHEMDVDFQTDGNVQKEPKTLRNFRACLVDLVKELLKPSWHEGRLSKDAHVMIVKKSVDKVVSTLEPQQIPTTIDAAKQYVSSCRGKIAKLVNGYVNKYGKS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00032 735 Coils Coil 19 156 - -
Gabi4083g00032 735 SMART c3hfinal6 264 289 IPR000571 GO:0046872
Gabi4083g00032 735 MobiDBLite consensus disorder prediction 548 569 - -
Gabi4083g00032 735 MobiDBLite consensus disorder prediction 610 630 - -
Gabi4083g00032 735 MobiDBLite consensus disorder prediction 16 66 - -
Gabi4083g00032 735 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 28 734 - -
Gabi4083g00032 735 MobiDBLite consensus disorder prediction 308 327 - -
Gabi4083g00032 735 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 287 IPR000571 GO:0046872
Gabi4083g00032 735 SUPERFAMILY CCCH zinc finger 263 287 IPR036855 GO:0046872
Gabi4083g00032 735 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Gabi4083g00032 735 Gene3D - 256 346 - -
Gabi4083g00032 735 MobiDBLite consensus disorder prediction 308 338 - -
Gabi4083g00032 735 MobiDBLite consensus disorder prediction 73 154 - -
Gabi4083g00032 735 MobiDBLite consensus disorder prediction 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00032 Gabi-Chr4083 278080 283973 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4083g00032 zf-CCCH 6.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00032 - - aprc:113872594 764.607