Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00031 ATGTCTCTCCCAAATTCTCCCACAGCCTCCCATGATGAAATCGATCCATCCTTTCAAGAAGAAGAAGAAGAGGAGATAGAAGACCCTGAGGAAGAAGTGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGAGGGAGAGGAAGGGGAAGAAGAAGAAGAAGAGGGAGAGGAAGAGGAAGAGGAAGAGGTAAAAGTGAAGGAGGAGGTAGGATTGGTAGAAGAAGAGGAGGAGGATGTAGAAGAAGAGTTGGAGGAGGTAGAAGAGGAGGAGGAGGAGGAGGAGGTAGAAGAAGAGATGGAGGAGGTAGAAGTGGAAGAAGAGGAGGATGAGGTAGAAGAAGAAGCAGCAGCAGTAGAAGAGGAGGTAGAAGAAGAACCAATGGAGGAGGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGTGGAGGAGGAGGACAAAAGGGCAGTGACAGATTCTCCACCCAATGTGGATAACAATCGCAAAGATTCCAGCCAACATATGGGGTCTGAGGAGCAAGACGAGAACGTGGGGCCAGTTTCATCTATTGTAGAAAAACCTGAACAAGTGTCACAATCTACTTTGCATGACATGGAAAAGAATGATGCCATGGTCATAGCATCTGTTCCTTCATACGATGGTGGCCAGAATTATAGGAACGAAATCAAGCAGCCGGGAGTAGAGTTAAAGGATGATGTGAAACAAATGACATCAAGGACTAGAAGTCTGTCTCCTGGTGCCGAGATTGAAGATCAAAACAAACGGCCGAAAATTATATGTGATTTTTTTGCCAAAGGTTGGTGTATAAGAGGAAGTTCCTGTAGTTTTCTTCATATAAAAGATACTGTGAATAATTTTGACCAGCAGGCTGAAGGAGACTTAGTAACTGCACATCAAAAGAGAGAATTGAAATCGGAAGAAGGTGTTAGGGAAAATGTTGAGAGATCGAGGATGAATGAGCAAGAAGCAAACCCAAGTTGGCATCTATCTCAAGAAAAACAGAAGTTTCCAGAGAATAGATTTGCATTTAACGCATCAAACAATTATTTCAGCCCAAATCTCTCTTCGTATTCAACCCGTGCTGAGGGAATGGCCACCATTCGAAACAAACATATGCACAAAGGATATACTTCTGCAGTTTTGAGTCATTCACCGAATTCAAGTGTGGTTACTCAATTTCCAGCTCCAAGCATGTCACTGTCCCACCGGATTTTAGCCCAATCAGGATGTTCATTGCCTTTTAGTTCCTCTCTAGGTGCAACTACTTTAGGTGACAAAGAATATCATGCCCCTACGTCCACTTTCTCTGGTTCAGAGCGGGAAGATTTGCCGCTAGTTAGTTCATCCAGGGTTCCACTGCATTCTACTGGATATAAATCAAAAATCCGTACTTATAATTGGGAACCTTCTGTACCATTTAAACCATCATTTTTTATTACTTCTATGAGTGTATCATCCCCTGGAGATCTTTATGATCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAAGCTTCCCTTTTAATTCAAGGATCATCTATCCAGGCTTCACCACAGGTGCGGACATATGGTGATTCTGCTGTAGTTGGGAAACACAAGTCTGATCTTAATGATGCCAAAAGTTCTGTATCTTCTCATAATAGATTTTATGAAAATGAGCCAAACAAAAGTTGTGTTCCTCGTGAAAAAGATTGTCTTGCAACTGAAACAGAGATAACATCAGGAACTTATGTAAACTATCTAGATGGTAAAGTGGGCGTCGGACAAGATTTTACAAAAACAGAGAAAGAGCGTGATGCTAGATATCATGGCCAAGGATCAGGGCACAAAAAGAAGAGAGTAGATAAGGATAAGAAAATTCATGAAATGGATGTTGACTTTCAGACGGATGGCAACGTGCAGAAAGAACCGAAGACATTAAGAAATTTCCGTGCGTGTCTTGTTGATTTGGTGAAAGAGTTGTTAAAACCATCTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATGTTATGATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACCCTAGAGCCCCAGCAGATTCCGACCACCATAGATGCTGCTAAGCAATATGTTTCTTCATGTCGGGGGAAAATTGCAAAGCTGGTCAACGGATATGTCAATAAATATGGCAAATCTTGA 2205 0.4209 MSLPNSPTASHDEIDPSFQEEEEEEIEDPEEEVEEEEEEEEEEEEEGEEGEEEEEEGEEEEEEEVKVKEEVGLVEEEEEDVEEELEEVEEEEEEEEVEEEMEEVEVEEEEDEVEEEAAAVEEEVEEEPMEEEVEEEEEEEEEEEEEEEEVEEEDKRAVTDSPPNVDNNRKDSSQHMGSEEQDENVGPVSSIVEKPEQVSQSTLHDMEKNDAMVIASVPSYDGGQNYRNEIKQPGVELKDDVKQMTSRTRSLSPGAEIEDQNKRPKIICDFFAKGWCIRGSSCSFLHIKDTVNNFDQQAEGDLVTAHQKRELKSEEGVRENVERSRMNEQEANPSWHLSQEKQKFPENRFAFNASNNYFSPNLSSYSTRAEGMATIRNKHMHKGYTSAVLSHSPNSSVVTQFPAPSMSLSHRILAQSGCSLPFSSSLGATTLGDKEYHAPTSTFSGSEREDLPLVSSSRVPLHSTGYKSKIRTYNWEPSVPFKPSFFITSMSVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSSIQASPQVRTYGDSAVVGKHKSDLNDAKSSVSSHNRFYENEPNKSCVPREKDCLATETEITSGTYVNYLDGKVGVGQDFTKTEKERDARYHGQGSGHKKKRVDKDKKIHEMDVDFQTDGNVQKEPKTLRNFRACLVDLVKELLKPSWHEGRLSKDAHVMIVKKSVDKVVSTLEPQQIPTTIDAAKQYVSSCRGKIAKLVNGYVNKYGKS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00031 734 MobiDBLite consensus disorder prediction 307 326 - -
Gabi4083g00031 734 Coils Coil 19 156 - -
Gabi4083g00031 734 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 28 733 - -
Gabi4083g00031 734 SMART c3hfinal6 263 288 IPR000571 GO:0046872
Gabi4083g00031 734 MobiDBLite consensus disorder prediction 16 66 - -
Gabi4083g00031 734 MobiDBLite consensus disorder prediction 547 568 - -
Gabi4083g00031 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 286 IPR000571 GO:0046872
Gabi4083g00031 734 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872
Gabi4083g00031 734 MobiDBLite consensus disorder prediction 609 629 - -
Gabi4083g00031 734 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Gabi4083g00031 734 MobiDBLite consensus disorder prediction 307 337 - -
Gabi4083g00031 734 Gene3D - 255 345 - -
Gabi4083g00031 734 MobiDBLite consensus disorder prediction 73 154 - -
Gabi4083g00031 734 MobiDBLite consensus disorder prediction 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00031 Gabi-Chr4083 278080 283973 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4083g00031 zf-CCCH 6.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00031 - - aprc:113872594 758.059