Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00024 ATGGATGAAAGCTGGGCTGAGGGAAAGGGGACCTTGAATTACAAGGTGGAGGATGAGTATGAAGAAGAGGAGGAGGAAGAGGTAAGTGAAACGGGTTTTGGAGAAGATAGAAGGAAGAAGAGGGTGGTTACTGATCTTTACAGCAAGAAAGGGTCTAAAGCTGGTTGTTCAGTGCCACCTTCTTGTCAAGTGGATAATTGTAATGCTGATCTAAGCGATGCTAAGCAGTACCACAAGCGGCACAAGGTATGTGAGTATCATGCCAAGGCTACTGCAGTACTCATCGCAGAGCAGCAGCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGTTATCAGAATTTGATGACTCAAAAAGGAGTTGCAGAAGGCGTTTAGCTGGACATAACGAGAGGCGTCGCAAAAATGCATCTGAATATCATGGAGAAGGATTTCATGGATGA 444 0.4527 MDESWAEGKGTLNYKVEDEYEEEEEEEVSETGFGEDRRKKRVVTDLYSKKGSKAGCSVPPSCQVDNCNADLSDAKQYHKRHKVCEYHAKATAVLIAEQQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEYHGEGFHG 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00024 147 MobiDBLite consensus disorder prediction 125 147 - -
Gabi4083g00024 147 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677|GO:0005634
Gabi4083g00024 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 137 IPR044817 GO:0003677
Gabi4083g00024 147 Gene3D - 58 123 IPR036893 GO:0003677|GO:0005634
Gabi4083g00024 147 MobiDBLite consensus disorder prediction 132 147 - -
Gabi4083g00024 147 Pfam SBP domain 62 135 IPR004333 GO:0003677
Gabi4083g00024 147 PIRSF SBP 6 146 IPR017238 GO:0003677|GO:0003700|GO:0009908
Gabi4083g00024 147 MobiDBLite consensus disorder prediction 1 16 - -
Gabi4083g00024 147 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Gabi4083g00024 147 FunFam Squamosa promoter-binding-like protein 14 53 123 - -
Gabi4083g00024 147 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00024 Gabi-Chr4083 235434 237449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00024 62 144 SBP-box Gene Family AT3G15270 68.675 7.82e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi4083g00024 SBP 7.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00024 - - vra:106775516 213.772