Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00023 ATGTTGGGTAACTGTGAGGAAATGGTATTCATTCCTCCAACCACTAACCAATGGCCACAGAGTCAGATAGATGATCATAATAAGGACTCGATGGCTTCCTCATCAGGTGGTGGGAGGGTAATGGAAAAACCAGGTCAAGAGCTTCTGCAGCAGCAACAACAAGCCCTCAAGTGCCCTCGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTATAGTTTATCTCAGCCAAGACACTTCTGCAAAGCCTGCAAGCGATATTGGACAAGAGGTGGAACCCTCAGGAATGTCCCTGTCGGCGGCGGTTGCAGAAAAAACAAGCGTGTCAAGAGACCAAACACCTCCTCCGCCATTGACGCAGCTTCTTCTCCTACTGCCACCTCAAACCATCCTTCACAACCCCAGATCGACACTGCTTCAACCTCAAATCATATCAATCCTTTCTTTTATGGATTACCCAATAACTCTTGCGATTTGAATCTTCCATTCCAAAGGTTTAATTCCAGAATATCTAGTTCTGTGTATGATCTTCAGCCGCAGATGAATGCCCTCGGAGTAGGTTTTTCGTCCTGTGAAACTAGTGATAATGGTTATAATAGGAATGGTTTCACTTCAAATAATACGCTTCTTTCTGGTTATAATTCCATCTTTAGCTCTTCTTCTTCAACTTCTACATCTAGTACAACAGTTATGCCTTCCCTGTTGAGCTCTACTCTACTGCAACAAAAATTCGTCAATGGTGGAGTTAAAGATGGTTCAGCTGGTAACAACGCTTTCCAGGGCTTAACACCAATAGAGCAGCTGCAAATGGCAAGAAATAGCGGTGGTGAGTCAGGGATGATGGCTTTAAAAGACGTGAAAGTAGAAGGACAAAACAGGTTGGAATGGAATGGTGTTTTCCAAAACCAGATCGAGCATGTGGGCTTGTACGATCCTTCGCTTTATTGGAATACAACAACTTCTATGGGTGTTTGGAACGATCAAGCTAATGTTGGTCCATCAGTTACTTCTCTGATCTAG 1026 0.4337 MLGNCEEMVFIPPTTNQWPQSQIDDHNKDSMASSSGGGRVMEKPGQELLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNTSSAIDAASSPTATSNHPSQPQIDTASTSNHINPFFYGLPNNSCDLNLPFQRFNSRISSSVYDLQPQMNALGVGFSSCETSDNGYNRNGFTSNNTLLSGYNSIFSSSSSTSTSSTTVMPSLLSSTLLQQKFVNGGVKDGSAGNNAFQGLTPIEQLQMARNSGGESGMMALKDVKVEGQNRLEWNGVFQNQIEHVGLYDPSLYWNTTTSMGVWNDQANVGPSVTSLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00023 341 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Gabi4083g00023 341 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Gabi4083g00023 341 MobiDBLite consensus disorder prediction 105 141 - -
Gabi4083g00023 341 MobiDBLite consensus disorder prediction 115 141 - -
Gabi4083g00023 341 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Gabi4083g00023 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 230 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00023 Gabi-Chr4083 211338 213262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00023 1 341 C2C2-Dof Transcription Factor Family AT1G28310 39.785 1.18e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4083g00023 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00023 - - qsa:O6P43_031858 404.831