Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00019 ATGGCTTCTTCTGCAACTCTCACTTCTTCACTTTCCTCTCTCTCAATTCTTCACAGTCACAGTCACAGTCACACCTCTTCCCGTTTCTCTCTCCTCCACGCTCCCAATCCCAAATTCACATTCTCTATCCTCACCCAACAACCACAATCATCATTACCATTGCTCACCACCACCAAAAAAGCAAAATCCTCCGATGAAATTGACACAAGCTTCTTCGACAACGTGAACCCTGAAGAAAACATTCCTTTCAATCCCCCAGAAGTCCCTGAAGACTTCGTTGCCCCTCCTTCCATCGACGAGGGTCCTTTGGAGACCGAAGACGAAATAGCCGCAGCGTACGAGGAGCTTTATGGTCCTGCGTACAGTGGCGTCAGTGTTCTGGGAAATGACATATACGTTATGGACGCAAAGGTGAGGAAAGAAACTGGGTTCGGTTCGAAATCCAAGAGGGAGAAGACGAGGGATGGTTTTGAAGAAAGGGTGGTTCAAGTGAGAAGGGTAACCAAGGTGGTCAAAGGAGGGAAACAGATGCGGTTCAGGGCGGTTGTGGTGGTTGGTGACAAGAATGGCCAAGTGGGTGTTGGTGTTGGCAAGGCCAAGGAGGTTGTAGGTGCTGTTCAGAAGTCTGCTGTCAATGCAAGGAGGAATATCATCAAAGTGCCTTTGACAAAGTACTCCACTTTCCCACATAGAGCCGACGGAGATTATGGAGCAGCCAAAGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTAGAAATGGCAGGAGTTGAAAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCGCTCAACAATGCCCGAGCAACGGTTGTTGCAGTGCAGAAAATGAAGCAGTTCCGTGAGGTTGCACAGGAGCGTGGGATCCCAATGGAAGAACTATGGAAATGA 942 0.4851 MASSATLTSSLSSLSILHSHSHSHTSSRFSLLHAPNPKFTFSILTQQPQSSLPLLTTTKKAKSSDEIDTSFFDNVNPEENIPFNPPEVPEDFVAPPSIDEGPLETEDEIAAAYEELYGPAYSGVSVLGNDIYVMDAKVRKETGFGSKSKREKTRDGFEERVVQVRRVTKVVKGGKQMRFRAVVVVGDKNGQVGVGVGKAKEVVGAVQKSAVNARRNIIKVPLTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELWK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00019 313 ProSitePatterns Ribosomal protein S5 signature. 174 206 IPR018192 -
Gabi4083g00019 313 Gene3D - 148 219 - -
Gabi4083g00019 313 NCBIfam 30S ribosomal protein S5 156 310 IPR005712 GO:0003735|GO:0006412|GO:0015935
Gabi4083g00019 313 Hamap 30S ribosomal protein S5 [rpsE]. 134 310 IPR005712 GO:0003735|GO:0006412|GO:0015935
Gabi4083g00019 313 ProSiteProfiles S5 double stranded RNA-binding domain profile. 157 220 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi4083g00019 313 Pfam Ribosomal protein S5, C-terminal domain 234 304 IPR005324 GO:0003735|GO:0005840|GO:0006412
Gabi4083g00019 313 SUPERFAMILY dsRNA-binding domain-like 153 222 - -
Gabi4083g00019 313 MobiDBLite consensus disorder prediction 70 89 - -
Gabi4083g00019 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 227 305 IPR020568 -
Gabi4083g00019 313 FunFam 30S ribosomal protein S5 222 313 - -
Gabi4083g00019 313 Gene3D - 224 312 IPR014721 -
Gabi4083g00019 313 FunFam 30S ribosomal protein S5 146 218 - -
Gabi4083g00019 313 Pfam Ribosomal protein S5, N-terminal domain 157 221 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi4083g00019 313 PANTHER RIBOSOMAL S SUBUNIT 147 312 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00019 Gabi-Chr4083 169103 174609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00019 157 297 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 9.30e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00019 K02988 - gmx:100787105 417.157