Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00018 ATGACCTCAACTTCTAACGATCATGGGGATTGGGACCCTGATAAAATGCTTCGATTATATATACATGATTATATGATCAAAAGGGGAATGCACGAGGTTGCTGAGATTTTCAAAAATGAAGCCCAACTTCCTAACAATATCGGTGTGCTTCATTCTCCAGATGGGTTCCTGCATGAATGGTGGTCTATTTTCTATGCGGTATTTACCTCTAGGCAAAGGAATGATCAGGAGATTGGGCCAGAATCCTCTAGTAAGGTGGTCCCAAAGATTGAAGACAACGCAAGGAATAGTACCCCTCCTAGAACCCCTCTAACACAAATGAGGGAGCAGAGACCTCAACAATTTCAAGTCAGCTTCAGCGTTGACAACATGATGGCACAACCAGCTGCTTGTTTAATACCTTCAACAGTGTCCGATAAACAGCATCTTCGATATCTGGCAGAAAATGTTGAAAGTTGGGATCTTATCAAAGAAAATAACCTGAAGTTCTGTTATCCACCGCAAGAAGTAGGCATGCCGGACCAGAAGCAAGTCTTTAAGGATCGTGGAATTGGCATGCGTGTAAGGAGGGATGCACCTACGAACCCTCTGGATGTAGTACCAAGAACACTGCCGCCTTTAGATGGACCTCATGAAACAAAAACCAACGAAGCACTCAATCTAGCGCCACTAAATGGATGGCCAGTAAAAAATCAGGTACTAACTTCACTTTTGCAAACACCAGACTATCGAAAGCGGTATCAAGTGTTGAAAACACCAAGACAGGACGCAGTCCTTGCTCTTCCATGTACTACTAAAAGTCAGACTTTCACACTTTCTGGAAACTCTACCAAATTTAACAGTCAATATCCGAAGATTCCCATCATTGAATCAAGTAATGAAGATAGGCAGATGACAGACCAATTGATCAGAACTGTAGAACATCAATATCAGCAGGATCAGCAAATGCAGATGCTGTCCCAGAATGTTGAGAAGAGCAAAAAGAGAAAGACAACAGCGTTCGTAAGAACTGGAGAAAGTGCCCTGGACTGTGTGGATGCAGCAGATGGAAAACCTGTGGATGAAAATGTGGAGTCTTTCCTGTCTTTGGAAAATGAACATGCTGATCATAGGATTGTGCCTTTCAGCAATCTGAAACGTATTTCAGCTACATACGGTAGAAATGAAAAGAAAGGTTTTTCATTCGAAGAGGTTGGTTGCCTTCACTCAAGCAAAAGCAAGGTTTTGTCCAGCCATTTTTCGTCGGATGGAAAAGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAACTTTAGATTGTGTTGCTACTCCAGAAGCACATTCACATCTCGTTACAGATGTTCGGTTTAGACCAGATTCAACTATATTTGCAACATCTTCCTTTGATCGATCTGTAAAACTATGGGATGCAGCCAGACCAACCAGATCATTGCTCAAATTTACTGGACACGCCGAACAAGTAATGTCATTGGACTTCCACCCGAGACAGGTAGACCTTCTTTGCTCGTGCGATAGCAATGATGTAATTCGACTGTGGAATGTCAATCAATGTGTTTGCATGCATATCACTAAGGGAGGTAGTAAACAAGTCAGATTCCAGCCTCGTATTGGGAAGTTTTTGGCTACTGCTACAGGAAATAATATTAAAATAGTTGATGTTGAGACTGATCAGCTTCTATACTATCTAGAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGATAGAAGTGGAAGCTATATTGCCTCCGTCAGTGAAGATAGTGCACGTGTCTGGTCTGTTGCTTCAGACGGAAAATGCATCAGTGAATTGCATTCAAACGGCAACAAGTTTCAATCCTGCCTATTTCATCCGGGATATCTTAACCTCTTAATTATTGGTGGCTATCAGTCCCTGGAATTATGGAGTCCAACGGAGAGCAGTAAAACATGGGCCGTTCCAGCACACAAGGGATTAATTGCTGGACTGGCAGATTCACCCGAATATGGATTGATTGCCTCTGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 2055 0.4229 MTSTSNDHGDWDPDKMLRLYIHDYMIKRGMHEVAEIFKNEAQLPNNIGVLHSPDGFLHEWWSIFYAVFTSRQRNDQEIGPESSSKVVPKIEDNARNSTPPRTPLTQMREQRPQQFQVSFSVDNMMAQPAACLIPSTVSDKQHLRYLAENVESWDLIKENNLKFCYPPQEVGMPDQKQVFKDRGIGMRVRRDAPTNPLDVVPRTLPPLDGPHETKTNEALNLAPLNGWPVKNQVLTSLLQTPDYRKRYQVLKTPRQDAVLALPCTTKSQTFTLSGNSTKFNSQYPKIPIIESSNEDRQMTDQLIRTVEHQYQQDQQMQMLSQNVEKSKKRKTTAFVRTGESALDCVDAADGKPVDENVESFLSLENEHADHRIVPFSNLKRISATYGRNEKKGFSFEEVGCLHSSKSKVLSSHFSSDGKVLASAGHEKKVFIWNMETLDCVATPEAHSHLVTDVRFRPDSTIFATSSFDRSVKLWDAARPTRSLLKFTGHAEQVMSLDFHPRQVDLLCSCDSNDVIRLWNVNQCVCMHITKGGSKQVRFQPRIGKFLATATGNNIKIVDVETDQLLYYLEGHVKDVISICWDRSGSYIASVSEDSARVWSVASDGKCISELHSNGNKFQSCLFHPGYLNLLIIGGYQSLELWSPTESSKTWAVPAHKGLIAGLADSPEYGLIASASHDHCVKLWK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00018 684 MobiDBLite consensus disorder prediction 89 110 - -
Gabi4083g00018 684 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 45 IPR006594 GO:0005515
Gabi4083g00018 684 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 475 IPR001680 GO:0005515
Gabi4083g00018 684 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 521 IPR001680 GO:0005515
Gabi4083g00018 684 Pfam LisH 20 41 IPR006594 GO:0005515
Gabi4083g00018 684 SUPERFAMILY WD40 repeat-like 395 684 IPR036322 GO:0005515
Gabi4083g00018 684 CDD WD40 397 684 - -
Gabi4083g00018 684 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 684 IPR001680 GO:0005515
Gabi4083g00018 684 SMART WD40_4 603 642 IPR001680 GO:0005515
Gabi4083g00018 684 SMART WD40_4 643 684 IPR001680 GO:0005515
Gabi4083g00018 684 SMART WD40_4 436 475 IPR001680 GO:0005515
Gabi4083g00018 684 SMART WD40_4 522 558 IPR001680 GO:0005515
Gabi4083g00018 684 SMART WD40_4 394 433 IPR001680 GO:0005515
Gabi4083g00018 684 SMART WD40_4 479 519 IPR001680 GO:0005515
Gabi4083g00018 684 SMART WD40_4 561 599 IPR001680 GO:0005515
Gabi4083g00018 684 MobiDBLite consensus disorder prediction 75 110 - -
Gabi4083g00018 684 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 475 - -
Gabi4083g00018 684 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 684 - -
Gabi4083g00018 684 Gene3D - 533 684 IPR015943 GO:0005515
Gabi4083g00018 684 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 521 - -
Gabi4083g00018 684 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Gabi4083g00018 684 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 442 IPR001680 GO:0005515
Gabi4083g00018 684 MobiDBLite consensus disorder prediction 189 209 - -
Gabi4083g00018 684 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 684 IPR044716 GO:0003714
Gabi4083g00018 684 Gene3D - 375 532 IPR015943 GO:0005515
Gabi4083g00018 684 Pfam WD domain, G-beta repeat 438 475 IPR001680 GO:0005515
Gabi4083g00018 684 Pfam WD domain, G-beta repeat 652 684 IPR001680 GO:0005515
Gabi4083g00018 684 Pfam WD domain, G-beta repeat 483 519 IPR001680 GO:0005515
Gabi4083g00018 684 Pfam WD domain, G-beta repeat 564 599 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00018 Gabi-Chr4083 160815 168023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00018 388 683 Miscellaneous Gene Families AT5G08390 24.359 2.17e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi4083g00018 WD40 0.017 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00018 - - gsj:114387334 952.97