Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00003 ATGGAGAACAATCCAAGTTCATCCAGAATTGATAGAAAATTCATCGAGAGAAATAGAAGAAATCAAATGAAAGCTCTCTACCGCAAGCTCAACTCACTTGTGCCTCATCAAAGCTCGAGGGAGGAAATTTCAGTGACGGATCAGCTAGAGGAAGCAACAAACTACATAAAGAAGTTACAGATGAACCTGGAGAAAATGAAGGACAAGAAGAACATGCTACTAGGAATTGAAAGGCCAAATGAGAGCATGAATCGAGGAAAGAACATGGGGTTAAAATGTCCACAAATTGAGATCCAACAAATGGGCTTAGCCTTGGAGGTTGTTCTAATAACTGGGTTGGATTGTAAGTTCATGTTCAATGAGACCATTCGTGTTCTTCATGAAGAAGGAGTAGATATTGTTCATGCCAGTTATAAAGTCGTTGAAGATGTAGTTTTCCATTCAATTCATTCTAAGGTAGGGGACTCTGCCTATGGAGCTGCGAAGATATCTGAGAGGCTAAAGAAGTTTATGTGTGATTCTACCTATAATGCCTCTTAA 540 0.3944 MENNPSSSRIDRKFIERNRRNQMKALYRKLNSLVPHQSSREEISVTDQLEEATNYIKKLQMNLEKMKDKKNMLLGIERPNESMNRGKNMGLKCPQIEIQQMGLALEVVLITGLDCKFMFNETIRVLHEEGVDIVHASYKVVEDVVFHSIHSKVGDSAYGAAKISERLKKFMCDSTYNAS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00003 179 FunFam Transcription factor bHLH162 1 85 - -
Gabi4083g00003 179 Pfam Helix-loop-helix DNA-binding domain 12 60 IPR011598 GO:0046983
Gabi4083g00003 179 Coils Coil 49 76 - -
Gabi4083g00003 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Gabi4083g00003 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
Gabi4083g00003 179 Gene3D - 1 87 IPR036638 GO:0046983
Gabi4083g00003 179 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00003 Gabi-Chr4083 38701 39574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00003 3 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 46.111 1.93e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4083g00003 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00003 - - gmx:100784418 273.092