Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4083g00002 ATGGAAGAAGATACTAATTCTTGGCTAAGGAGGACGAAATTCTCTCACACAGTGTGCCATAGATTGGATCCTTCTAGATTGGGGTCTATTCCTTTCAGCATTCAGTCAGAGCACAACTCAAAGCCTTCTTCACAGGTTCAGAGAAATCTCAAATTAAACAAGCATAGATCTTTGTCACCATTGCCTCAAACTTTTCTTTCTGAGGCCTTCAGAGAAGCTAGACACGAGCAGAAGAGGTTCTCAACACCAGGTCCTAGGAGGAATAAGAGAATTATGGGCAAGTTATTGAACAAGGATCCTCAGGAAATTAAGGTATCAAGTTCAAAATCGCCTTCCAATAGTCCAAACAGGCAAATGAAGTCGAAGCACCCCAAGGATTCGGCATGGACTAAGTATTTGGAAAATGGTGGAGGAAGGGTTACTGCTGTGGAAACCGCTGAAGAATGGACTGTTGACCTGTCTAAGCTGTTTCTTGGCCATAGGTTTGCTCATGGAGCTCATAGTCGGCTTTACCATGGTGTATATAAGGAAGAGCCTGTTGCTGTTAAAATAATTAGAGTACCTGATGATGACGAAAATGAAACCTTGGCTGCTCGATTAGAAAAACAATTCATTAGAGAAGTCACCCTTTTATCTCGCCTCCACCATCAAAATATTGTAAAGTTCTCAGCAGCATGCAGAAATCCACCGGTTTATTGTATTATCACAGAATTTCTATCGGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACAAAACTATTTCTTTACAAAAGCTAATAGCTTTTGCTCTTGATATTGCCCGAGGAATGGAATATATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCTGAGAATGTCCTTATTGATATAGACTCTCATCTTAAAATTGCTGATTTTGGTATTGCTTGTGAGGAGGCATTCTGTGACTTATTAGCTGATGACCCTGGCACCTACCGTTGGATGGCACCTGAGATGATCAAACGTAAATCCTATGGGAGAAAGGTTGATGTCTACAGTTTTGGTCTTATCTTGTGGGAAATGTTGACCGGAACAATACCATATGAGGATATGAATCCAATCCAGGCTGCTTTTGCTGTTGTAAATAAGAATTCAAGGCCAGTTATTCCTTCAGACTGCCCATCTGCTATGCGAGCTTTAATTGAGCAATGCTGGTCCTTGCAACCAGATAAGAGGCCTGAGTTCTGGCAGATTGTTAAGGTATTAGAGCAATTTGAATCTTCACTTGCCCGTGATGGAAACCTGACTCTGGTGCAAAGCCCTAGTTGCCAAGATCATAAGAAAGGGCTTCGTCATTGGATTCAAAAGCTTGGTCCCGTGCATCAAAATAGTGGCCCTATGCCTAAGCCCAAATTCACTTGA 1392 0.4188 MEEDTNSWLRRTKFSHTVCHRLDPSRLGSIPFSIQSEHNSKPSSQVQRNLKLNKHRSLSPLPQTFLSEAFREARHEQKRFSTPGPRRNKRIMGKLLNKDPQEIKVSSSKSPSNSPNRQMKSKHPKDSAWTKYLENGGGRVTAVETAEEWTVDLSKLFLGHRFAHGAHSRLYHGVYKEEPVAVKIIRVPDDDENETLAARLEKQFIREVTLLSRLHHQNIVKFSAACRNPPVYCIITEFLSEGSLRAYLHKLEHKTISLQKLIAFALDIARGMEYIHSQGVIHRDLKPENVLIDIDSHLKIADFGIACEEAFCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMLTGTIPYEDMNPIQAAFAVVNKNSRPVIPSDCPSAMRALIEQCWSLQPDKRPEFWQIVKVLEQFESSLARDGNLTLVQSPSCQDHKKGLRHWIQKLGPVHQNSGPMPKPKFT 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4083g00002 463 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 90 419 - -
Gabi4083g00002 463 Gene3D Phosphorylase Kinase; domain 1 144 239 - -
Gabi4083g00002 463 ProSiteProfiles Protein kinase domain profile. 156 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00002 463 SUPERFAMILY Protein kinase-like (PK-like) 141 412 IPR011009 -
Gabi4083g00002 463 MobiDBLite consensus disorder prediction 74 127 - -
Gabi4083g00002 463 MobiDBLite consensus disorder prediction 101 118 - -
Gabi4083g00002 463 FunFam Serine/threonine-protein kinase isoform 1 146 240 - -
Gabi4083g00002 463 PRINTS Tyrosine kinase catalytic domain signature 236 249 IPR001245 GO:0004672|GO:0006468
Gabi4083g00002 463 PRINTS Tyrosine kinase catalytic domain signature 339 361 IPR001245 GO:0004672|GO:0006468
Gabi4083g00002 463 PRINTS Tyrosine kinase catalytic domain signature 274 292 IPR001245 GO:0004672|GO:0006468
Gabi4083g00002 463 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Gabi4083g00002 463 PRINTS Tyrosine kinase catalytic domain signature 320 330 IPR001245 GO:0004672|GO:0006468
Gabi4083g00002 463 SMART serkin_6 156 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4083g00002 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Gabi4083g00002 463 Pfam Protein tyrosine and serine/threonine kinase 159 412 IPR001245 GO:0004672|GO:0006468
Gabi4083g00002 463 CDD STKc_MAP3K-like 163 412 - -
Gabi4083g00002 463 FunFam serine/threonine-protein kinase HT1 241 434 - -
Gabi4083g00002 463 Gene3D Transferase(Phosphotransferase) domain 1 240 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4083g00002 Gabi-Chr4083 19556 23248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4083g00002 1 463 MAP Kinase Kinase Kinase AT5G58950 55.894 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi4083g00002 PK_Tyr_Ser-Thr 5.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4083g00002 - - gmx:100500590 801.971