Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4082g00001 ATGGAATTATGTGAACGGGGTGAGCTTTATGATAGGATTGTGGGAAAGGGATATTACACGGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTTGTTAAGGATTGCCACGCCCTTGGAGTAATACATCTTGATCTTAAGCCTGAGAATTTTCTTTTCGTTAATGGCCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGATTGTCTGTTTTCTTTAAACCAGGAGATGTTTTCAAGGATCCGGTTGGAAGTCCTTTTTATATAGCACCTGAAGTTCTAGGCAAACGTTATGGCCCAGAAGCTGATGTCTGGAGTGCTGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGGAACAGAGCGAGAAATATATTGGAATGTTTTGCATGGTGATCTTAATTTCTCTTCAGATCCTTGGCTGTATATATCTGAAAGTGCAAAAGACTTGATTAGGAAGATGCTTGTTAGAGATCCTAAACAAAGGATAACAGTTGATGAAGTTCTTCGTCACCCTTGGTTTCAGGTTGATGGAGGTGCGCCTCTTGATTCTGCAGCTTTGAGTCGCCTGAAGCAGTTTTCTTTAATGAAAAAGCTCAAGAAAACGGCTTTTACAATTATTGCACAGAATCTTTCTGAAGAAGAAATTTCTGGTTTGAAAGAAATGTTTAAGAAGATAGATACTGACAACAGTGGTCAAATAAGTTTTGAAGAACTCAAGGTTGGACTGAAAACGTTTGGTGCTAATCTCAGGGGATCTGAAATTTTCGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGTACAATAGACTATGGAGAATTCATAGATGCAACATTGCATTTAAACAAAGTTGATATGGAAGATCATTTTGTTGACGCATTCTCATATTTTGATAAAGACGATAGTGGCCACATCACTCAAGGTAAGCTTCAAGCTTGTGAAGAATTCGGCACGCAGGATGTCCTCTTGGAGGAAATGATCCGAGAAGCTGATCAGAATAATGATAGCCGAATAGACTACAATGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTAGGTAGTAGCGGTCTAAAGGATAACACTAGTTTTAGCATTGGATTTATGGAGGCACTCTCAGTATGTTAA 1155 0.3939 MELCERGELYDRIVGKGYYTERKAAKLARTIVSVVKDCHALGVIHLDLKPENFLFVNGHEDSTLKAIDFGLSVFFKPGDVFKDPVGSPFYIAPEVLGKRYGPEADVWSAGVIIYILLCGTPPFWGGTEREIYWNVLHGDLNFSSDPWLYISESAKDLIRKMLVRDPKQRITVDEVLRHPWFQVDGGAPLDSAALSRLKQFSLMKKLKKTAFTIIAQNLSEEEISGLKEMFKKIDTDNSGQISFEELKVGLKTFGANLRGSEIFDLMQAADVDNSGTIDYGEFIDATLHLNKVDMEDHFVDAFSYFDKDDSGHITQGKLQACEEFGTQDVLLEEMIREADQNNDSRIDYNEFVAMMQRGNADLGSSGLKDNTSFSIGFMEALSVC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4082g00001 384 ProSiteProfiles EF-hand calcium-binding domain profile. 221 256 IPR002048 GO:0005509
Gabi4082g00001 384 ProSiteProfiles EF-hand calcium-binding domain profile. 326 361 IPR002048 GO:0005509
Gabi4082g00001 384 FunFam Calcium-dependent protein kinase 5 9 189 - -
Gabi4082g00001 384 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 351 - -
Gabi4082g00001 384 ProSitePatterns EF-hand calcium-binding domain. 234 246 IPR018247 -
Gabi4082g00001 384 FunFam Calmodulin A 215 358 - -
Gabi4082g00001 384 CDD EFh 297 356 IPR002048 GO:0005509
Gabi4082g00001 384 Gene3D Transferase(Phosphotransferase) domain 1 1 201 - -
Gabi4082g00001 384 CDD EFh 226 285 IPR002048 GO:0005509
Gabi4082g00001 384 Pfam EF-hand domain pair 300 356 IPR002048 GO:0005509
Gabi4082g00001 384 Pfam Protein kinase domain 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4082g00001 384 SUPERFAMILY Protein kinase-like (PK-like) 1 187 IPR011009 -
Gabi4082g00001 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Gabi4082g00001 384 ProSitePatterns EF-hand calcium-binding domain. 270 282 IPR018247 -
Gabi4082g00001 384 Gene3D - 202 361 - -
Gabi4082g00001 384 Pfam EF-hand domain pair 257 288 IPR002048 GO:0005509
Gabi4082g00001 384 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4082g00001 384 Pfam EF hand 226 252 IPR002048 GO:0005509
Gabi4082g00001 384 SMART serkin_6 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4082g00001 384 ProSiteProfiles EF-hand calcium-binding domain profile. 257 292 IPR002048 GO:0005509
Gabi4082g00001 384 CDD STKc_CAMK 1 180 - -
Gabi4082g00001 384 SUPERFAMILY EF-hand 217 357 IPR011992 -
Gabi4082g00001 384 SMART efh_1 330 358 IPR002048 GO:0005509
Gabi4082g00001 384 SMART efh_1 261 289 IPR002048 GO:0005509
Gabi4082g00001 384 SMART efh_1 225 253 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4082g00001 Gabi-Chr4082 14705 17574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4082g00001 1 377 EF-hand Containing Proteins AT5G04870 69.816 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4082g00001 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4082g00001 K13412 - gmx:100814475 595.119