Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4081g00078 ATGGCAACAACTAAAGGTCAAGTCATTACTTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGACGATTGAAGACGTTCAGGTGGCTCCGCCGCAGCCCGGCGAGGTCCGTATTCAAATTCTCTACACTGCTCTTTGTCACACTGATGCTTATACTTGGAGCGGCAAGGATCCAGAAGGTCTCTTCCCCTGTATTCTTGGCCATGAAGCTGCAGGGATTGTTGAAAGTGTTGGAGAAGGTGTTACTGAGGTTCAGCCTGGAGATCATGTTATACCCTGTTACCAGGCTGAGTGCAGAGAATGCAAGTTTTGCAAATCCGGCAAGACAAACCTTTGTGGCAAGGTTCGTGCTGCCACTGGAGTTGGGGTCATGCTCAGTGATCGCAAGAGTCGTTTCTCTATTAATGGAAAACCCATCTATCATTTTATGGGAACCTCAACCTTTAGTCAATACACTGTTGTTCATGATGTCAGCGTAGCTAAGATTGATCCAAAAGCTCCTTTGGAGAAAGTTTGTCTTCTCGGATGTGGTGTTTCAACCGGCCTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGTCAGGGTCAACTGTGGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAAGGTGCTAAAACTGCAGGTGCATCCCGGATTATTGGCATAGATATTGACAGCAAGAAGTTTGATATAGCAAAAAACTTCGGAGTCACCGAGTTTATTAATCCAAAAGAACATGAGAAACCAATTCAGCAGGTCATAGCTGATCTCACAGATGGTGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCTGTGATGAGAGCTGCCTTGGAATGCTGCCACAAGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGACTGGGCGTGTATGGAAAGGAACAGGTTTTGGTGGCTTCAAGAGCAGGTCACAAGTGCCTTGGCTCGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCACAATTTGACTCTTGCGGAGATCAACAAGGCTTTCGATCTTTTGCATGAAGGGGGATGTCTTCGTTGCGTGCTTTCAACGGATGCATGA 1143 0.4707 MATTKGQVITCKAAVAWEPNKPLTIEDVQVAPPQPGEVRIQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMLSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVSTGLGAVWNTAKVESGSTVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDIAKNFGVTEFINPKEHEKPIQQVIADLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTGFGGFKSRSQVPWLVDKYLKKEIKVDEYITHNLTLAEINKAFDLLHEGGCLRCVLSTDA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4081g00078 380 SUPERFAMILY GroES-like 4 194 IPR011032 -
Gabi4081g00078 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 183 321 - -
Gabi4081g00078 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Gabi4081g00078 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 14 199 - -
Gabi4081g00078 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Gabi4081g00078 380 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Gabi4081g00078 380 Pfam Zinc-binding dehydrogenase 207 330 IPR013149 -
Gabi4081g00078 380 Pfam Alcohol dehydrogenase GroES-like domain 35 163 IPR013154 -
Gabi4081g00078 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Gabi4081g00078 380 Gene3D - 183 321 - -
Gabi4081g00078 380 SUPERFAMILY GroES-like 327 376 IPR011032 -
Gabi4081g00078 380 Gene3D - 14 373 - -
Gabi4081g00078 380 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4081g00078 Gabi-Chr4081 716513 719589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4081g00078 1 332 Monolignol Biosynthesis Gene Families AT1G72680 25.816 1.40e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4081g00078 K00121 - fve:101306577 737.258