Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4081g00070 ATGATCGCCGACGGCTGCTTTGCCGGAATTTTAAGAGCTGCCGGTCACTCTGCGGCGAGGTTTCATAGCTTTAAGCTGCTCCCTTCCTCTGACGATGCTCTTCGCCAGTTTTGTGTTCGGCGAGAGAGAATGCCGGCGTCGGTTATCTTCCTCATTGCTCTTCTTAACTTGCTTTTACCTTGCTCAGTGAAGTCGGTTTCTCTCAGTGTGTCATTTGCCTCATCGGAAAGAGCTAAAACTTGGTTAGTTAAACCTTCTTCTGGTCCATCCCTGGCACCTGTTCCATCTCCATCTTATCAAGGTCCTAGTGTGACTCCAAGACCAAAATATCATGGTCATCATCGTCGCCATCATGCCGTGAGACCTTATGTAGTGGCTCCACCCCCTTCTAAAGACCAAGCTTGTGAGCCATTCTGTACGGATCCGCTCACATCAACTCCCTTTGGTACACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGGCTTACACTAGATGTAGCTCCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGAACGAGGTTGCATTAGGCACATATTTAGAACAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCACTGGGAGAGAAATTTGACAATACCACTGCAGCTCTGACATATGAGAGGTTTTGGCATAAAAAAGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTAGTGTACATCACTTATCCAGGAATGCCATCATCGCCACCATATGGAGCTATAAGTGGGAGTGGTCCCAGTGAAAGTGAAGATGGTATTCTGCCAGTCAGTGCCAACTTTGACAACAAGAGCCAGAAAATGAATCTCAGAACCATAATCATTATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTGGTTGGAGCATTTTCCATCGCTTTGAAATGGAAGAAGATTAGGAGACCATCAAGTGCTGTAGGCCCTGCTTTCCCATCATCTCTAAACAAGAGATCTGGCTTGGGGTCTATGTTGTCAAGCAGTATTACAAGCTCGACATCAGTGTCCCTTATGTCCGCAACAGCTACTTCCATTCTCTCCGCTAAAACATTTTCTCTCTCTGAGCTTGAGAAAGCTACAGATAAGTTTAGTTCAAGGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATAGTGGGACATTGGAAGATGGGACTGAAGTCGCGGTTAAGCTGCTTACAAGAAATAATCAGAATGGAGATCGTGAATTTATTGCAGAAGTTGAGATGCTAAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGTAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGGTGATGACAAGAAAAAGGTACCTCTAGATTGGGCTGCACGGATGAAAATTGCCCTTGGAGCTGCAAGGGGATTGGCCTATCTTCATGAGGATTCTAATCCTCGTGTAATTCACAGAGACTTTAAAGCTAGCAATGTGTTACTAGAAGATGACTTTACCCCTAAAGTTTCTGATTTTGGCTTGGCAAGAGAAGCGACTGAAGGAAGTAATCATATTTCTACACGGGTGATGGGAACTTTTGGGTACGTTGCCCCAGAATATGCGATGACAGGCCATTTACTTGTTAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACTGGCAAAAAACCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCACTTTTGAGGAGTAGAGAAGGTTTAGAACAGTTAGTGGATCCATGTTTGGCTGGAAGTTGCAACATTGATGACATGGCAAAAGTTGCTGCAATTGCTTCAATGTGTGCTCACCCGGAGGTCACGCAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACAATGACACAGATGAGACTGGTGGAGATTGTAGTAGTCGTAAGGACTCCTCTGCTCAGGACTCTGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCTGGAGGGATTACCCCTCGATTAACTTATGGGCAAGCATCTTCTTTCATCACAATGGAATATAGTTCTGGTCCTCTTGAAGAAATGGAAAACAGACCGTTTTCAACTTCAAGCATGATTGAAGATGAGATATCTTTACCAATTAGGCATGGGAATAGATCAGGCCCCTTAAGAACAGTCCGAAGCAAGCTATCGTTCTATAGATTTACAGGAAGCCGGAGTGAGCATGGGGGACCTTCTTCCAAGCGTGATTGGAATGATGGTTACTTGGTTTAA 2376 0.4436 MIADGCFAGILRAAGHSAARFHSFKLLPSSDDALRQFCVRRERMPASVIFLIALLNLLLPCSVKSVSLSVSFASSERAKTWLVKPSSGPSLAPVPSPSYQGPSVTPRPKYHGHHRRHHAVRPYVVAPPPSKDQACEPFCTDPLTSTPFGTPCGCVFPMKVRLTLDVAPYAVFPVMTELENEVALGTYLEQSQVKIMGATADSQNQGRTIVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGAISGSGPSESEDGILPVSANFDNKSQKMNLRTIIIIALSSFVLLLVLVGAFSIALKWKKIRRPSSAVGPAFPSSLNKRSGLGSMLSSSITSSTSVSLMSATATSILSAKTFSLSELEKATDKFSSRRVLGEGGFGRVYSGTLEDGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKKKVPLDWAARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGKKPVDMSQPQGQENLVTWARPLLRSREGLEQLVDPCLAGSCNIDDMAKVAAIASMCAHPEVTQRPFMGEVVQALKLIYNDTDETGGDCSSRKDSSAQDSDFRGDLAPSDSSWWNAGGITPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSMIEDEISLPIRHGNRSGPLRTVRSKLSFYRFTGSRSEHGGPSSKRDWNDGYLV 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4081g00070 791 MobiDBLite consensus disorder prediction 671 685 - -
Gabi4081g00070 791 ProSiteProfiles Protein kinase domain profile. 388 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4081g00070 791 MobiDBLite consensus disorder prediction 771 791 - -
Gabi4081g00070 791 CDD STKc_IRAK 394 663 - -
Gabi4081g00070 791 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Gabi4081g00070 791 Pfam Protein tyrosine and serine/threonine kinase 391 659 IPR001245 GO:0004672|GO:0006468
Gabi4081g00070 791 MobiDBLite consensus disorder prediction 85 112 - -
Gabi4081g00070 791 FunFam Receptor-like serine/threonine-protein kinase ALE2 464 681 - -
Gabi4081g00070 791 SUPERFAMILY Protein kinase-like (PK-like) 369 663 IPR011009 -
Gabi4081g00070 791 Gene3D Transferase(Phosphotransferase) domain 1 464 685 - -
Gabi4081g00070 791 MobiDBLite consensus disorder prediction 669 690 - -
Gabi4081g00070 791 Gene3D Phosphorylase Kinase; domain 1 359 463 - -
Gabi4081g00070 791 FunFam receptor-like serine/threonine-protein kinase ALE2 361 463 - -
Gabi4081g00070 791 PANTHER OS01G0750732 PROTEIN 127 681 - -
Gabi4081g00070 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4081g00070 Gabi-Chr4081 628192 636067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4081g00070 138 780 Receptor kinase-like Gene Family AT5G56890 54.518 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gabi4081g00070 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4081g00070 - - gmx:100792309 1325.07