Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4081g00068 ATGGCTGCTGCTGCCAATCCTGTAGTTGGGTCCCATATTTGGGTGGAGGATTCTGATGTAGCTTGGATAGATGGTGAGGTGTTGGAGGTTAATGGAAAAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCTAGTATCTATCATAAAGATACCGAAGTACCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACTTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATCAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAATCCTTTCATAAAGCTTCCTCATTTATATGATAGCCACATGATGGCACAATATAAAGGAGCAGCTTTTGGTGAATTAAGTCCTCATCCCTTTGCTGTTGCAGATGCATCATATAGGATTATGATAAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGCACTAAGTTACTTATGCAGTATCTTGCTTACATGGGAGGGAGAGCTGCTGCTGAAGGTAGAACTGTTGAGCAAAAAGTCTTGGAGTCAAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGAATTTCAGGAGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAATTATCATTGTTTCTACATGCTCTGTGCTGCACCTCAGGAGGATGTTAAGAAGTACAAATTAGGAAATCCAAGAACATTTCATTATCTGAATCAATCAAATTGCTATGAGTTGGATGGGGTTCATGAATCTAAAGAATATAGTGCTACGAGGAGAGCAATGGATGTTGTTGGAATAAGTTCCGAGGAACAGGATGCAATATTTCGAGTTGTTGCTGCAATTTTACATCTTGGCAACATTGAGTTCGTGAAAGGGAAGGAGATAGACTCATCTGAGCCCAAAGATGAAAAATCATGGTTCCATCTACACACTGCAGCTGAGCTTTTCATGTGCGATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGAGTAATTGTTACTCGCGATGAAACTATTACAAAATGGCGGGATCCAGAAACTGCTGCACTCAGCCGAGATGCTTTGGCTAAGATTGTATACACAAGGTTGTTTGACTGGTTGGTTCATAAAATTAATAATTCCATTGGTCAAGACCACGAGTCAAAATCCTTGATTGGCGTGTTGGATATTTATGGTTTTGAGAGTTTCAAGAATAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAGATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTCGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTCGACGAAGCTTGTATGTTTCCTAGATCAACGCATGAAACATTTGCCCAGAAGCTGTATCAGACCTTCAAAAATCATAAAAGGTTTAACAAGCCCAAATTATCACGTAGCGACTTCACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACTGAATTGTTCCTCGACAAGAACAAAGATTATGTTGTTGCAGAACACCAAGCACTTCTTTATGCTTCCAAATGCCCCTTTGTATCTGGTTTGTTTCTCCCTTCACCCGTGGAATTGTCCAAACAATCAAAGTCCTCTTCAATAGGTTCCGGGTTTAAGCAACAATTGCAAGCTTTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGATGTGTAAAACCCAATAATCTTCTTAAGCCAGCAATTTTTGACAACAAAAATGTTTTGCTGCAACTGCGTTGTGGGGGAGTTATGGAGGCGATTAGGATAAGCTGTGCTGGTTATCCCACTAGAAAAACCTTCGATGAATTTGTGGATCGATTTGGCTTTCTTGCCCCTGAAGCATTGGATGGAAGTTCTGATGAGGTCACTGCTTGCAAGAGGATCCTAGAGAATGTTGGACTTGAAGGCTGTCAGATTGGTAAAACAAAGGTGTTTCTTCGAGCTGGTCAAATGGCCGAACTAGATACCCGTAGAAGTGAGATCTTAGGAAATTCAGCAAGCATTATTCAGAGGAAAGTTCGAACATATTTGGCTCGCCAAAGTTTCATCTCGCTTCGTTTATCTGCTATGAAGATTCAAGCTGCATGCAGAGGGCAACTTGCTCGGCATGTTTACAAGGGAATGCAGCAGGAGGCTTCTAGTCTTATGATTCAAAGGTATTTCCGCATGCATATTGTTCGGAAGACTTACAAAGAATTGCATACCTCTGTTGCTGCTATCCATTCTGGTATGCGGGGGATGGCTGCTCGTTGTGAGCTACACTTTAGAAGGCGGACTAGAGCAGCAATTGTTATTCAGAGTCACTGCAGGAAATACTTGGATCAACTTCATTTCATGAAATTCAAGAAGGCAGCAATTACTACACAAAGTGTATGGAGAGGAAAAGTTGCTCGACAAGAATTGCGGAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCATGCTGCCAAAAATAAGCTTGAAAAGCAGGTTGAAGACCTAACATTAAGGTTGCAGCTGGAAAAACGTTTGAGGGTTGACATGGAAGAAGCAAAAGCAAAAGAAAATGAAAGATTACAGTCTGCTTTGCAAAAGATGCAACTTCAGTTTAGAGAAACTAAATTACTTCTTGAAAAGGAGTTGGAAGCGACAAAAAGAGTGGCAGAGAGAGTGCCTGTCATACAGGAAGTTCCAGTCGTTGACCATTCTTTGTTGGAGAAGCTCAGTAGTGAAAATAAGAAGCTCAAGAACTTGGTGAGCTCATTGGAAAAGAAAGTTGATGAAACGGAAAAAAAGTATGAAGAGGCAAACAGAATTGGCGAAGAAAGGTTGAAGCAAGCTTTGGATGCTGAATCAAAAATAATTCAGTTGAAGACTGCTATGCAAAGGTTTGAAGAGAAATTCTCAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTGCTAAACTCATCTGTGAAAACAATAGCAGTGCACCTCTCAACCCCTGTACCTGAGGATACATGTATTACACCTGTGAAACAGTTTTGTACAGAATCTGACACAAAATTGAGGAGATCTTACATTGAACGACATGAGAGTGTTGATTCACTTGTCAACTGTGTTACAAAAAATATTGGCTTCAATAATGGAAAGCCTATTGCTGCATTTACCATTTACAAATGTTTTCTCCACTGGAAATCATTTGAAGTTGAAAAAGCTACTGTATTTGATCGTCTAGTCCAGATGATTGGTTCCGCAATTAAGAATGAAGATGTCAATGATCTTATGGCCTATTGGCTGTCAAATACATCTGCATTATTGTTTTTACTTGAACAAAGCTTGAAATCTGGCAGTGTAAGGAATGCAACCCCAGTTAGAAAACCACCTAATCCGATGTCTCTCTTTGGAAGAATGACTATGGGTTTTCTTTCGTCCCCTTCTTCTGCCAATCTTGCTGCCCCTCCATTGGAGATTGTTCGCAGGGTAGAGGCTAAATACCCTGCTTTACTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATACGGCATCATTCGGGATAACTTGAAGGAAGAGTTAACATCGGTTTTGGCACTATGTATCCAGGCGTCAAGAACATCAAAGGGAGCATTACGATCTGGCCGATCCTCTGGTAAAGATTCATCGATGGTTCACTGGCAGAGTATTATTGAATCCCTCAACTCCTTCCTCTGTACACTGAAAGAGAACTTTGTGCCTCCCGTTCTTATACAAAAGATCTTCACTCAAACATTCTCATATATTAATGTGCAACTCTTCAACAGTCTTCTTCTCCGTCGCGATTGTTGCACATTCAGCAACGGGGAATATGTGAAAGCTGGATTGGATGAATTAGAGCTGTGGTGTGGCCAAGCAAAGGAGTATGCAGGGTCATCTTGGGATGAGCTTAAGCACACAAGACAGGCTGTTGGATTCTTGGTTATTCATCAAAAGTATAGGATTTCCTATGATGACATTATTAATGATTTATGCCCGATCTTGAGTATCCAGCAACTGTATAGAATATGTACTCTTTATTGGGATGACAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTCAAGCATGAGGATGCTTATGGCTGAGGACTCCAATAATGCTCAGAGCGATTCTTTCTTGTTGGATGACAGTTCCAGCATTCCATTCTCAGTGGATGACCTTTCTACATCATTGCAAGAGAAAGACTTCTCAGACATGAAACCAGCCGATGAGCTTCTTGAGAACCCAGACTTCCAATTTTTAAATGAGTATTATGAAGCTTAG 4497 0.4045 MAAAANPVVGSHIWVEDSDVAWIDGEVLEVNGKEIKVLCTSGKTVVVKASSIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADASYRIMINEGISQSILVSGESGAGKTESTKLLMQYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVKKYKLGNPRTFHYLNQSNCYELDGVHESKEYSATRRAMDVVGISSEEQDAIFRVVAAILHLGNIEFVKGKEIDSSEPKDEKSWFHLHTAAELFMCDAKALEDSLCKRVIVTRDETITKWRDPETAALSRDALAKIVYTRLFDWLVHKINNSIGQDHESKSLIGVLDIYGFESFKNNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFNKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFLPSPVELSKQSKSSSIGSGFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFDNKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGFLAPEALDGSSDEVTACKRILENVGLEGCQIGKTKVFLRAGQMAELDTRRSEILGNSASIIQRKVRTYLARQSFISLRLSAMKIQAACRGQLARHVYKGMQQEASSLMIQRYFRMHIVRKTYKELHTSVAAIHSGMRGMAARCELHFRRRTRAAIVIQSHCRKYLDQLHFMKFKKAAITTQSVWRGKVARQELRKLKMAARETGALHAAKNKLEKQVEDLTLRLQLEKRLRVDMEEAKAKENERLQSALQKMQLQFRETKLLLEKELEATKRVAERVPVIQEVPVVDHSLLEKLSSENKKLKNLVSSLEKKVDETEKKYEEANRIGEERLKQALDAESKIIQLKTAMQRFEEKFSDMESANHILQKQSLLNSSVKTIAVHLSTPVPEDTCITPVKQFCTESDTKLRRSYIERHESVDSLVNCVTKNIGFNNGKPIAAFTIYKCFLHWKSFEVEKATVFDRLVQMIGSAIKNEDVNDLMAYWLSNTSALLFLLEQSLKSGSVRNATPVRKPPNPMSLFGRMTMGFLSSPSSANLAAPPLEIVRRVEAKYPALLFKQQLTAYLEKIYGIIRDNLKEELTSVLALCIQASRTSKGALRSGRSSGKDSSMVHWQSIIESLNSFLCTLKENFVPPVLIQKIFTQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLDELELWCGQAKEYAGSSWDELKHTRQAVGFLVIHQKYRISYDDIINDLCPILSIQQLYRICTLYWDDNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPDFQFLNEYYEA 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4081g00068 1498 CDD MYSc_Myo11 76 720 IPR036018 -
Gabi4081g00068 1498 Coils Coil 1014 1048 - -
Gabi4081g00068 1498 PANTHER MYOSIN 58 1428 - -
Gabi4081g00068 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 785 IPR027417 -
Gabi4081g00068 1498 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Gabi4081g00068 1498 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Gabi4081g00068 1498 ProSiteProfiles Dilute domain profile. 1140 1440 IPR002710 -
Gabi4081g00068 1498 CDD MyosinXI_CBD 1093 1463 IPR037975 GO:0007015
Gabi4081g00068 1498 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 FunFam unconventional myosin-Va 833 881 - -
Gabi4081g00068 1498 Coils Coil 972 1006 - -
Gabi4081g00068 1498 Gene3D - 785 832 - -
Gabi4081g00068 1498 Gene3D - 833 882 - -
Gabi4081g00068 1498 Gene3D - 735 784 - -
Gabi4081g00068 1498 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Gabi4081g00068 1498 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Gabi4081g00068 1498 Pfam IQ calmodulin-binding motif 738 755 IPR000048 GO:0005515
Gabi4081g00068 1498 Pfam IQ calmodulin-binding motif 761 779 IPR000048 GO:0005515
Gabi4081g00068 1498 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515
Gabi4081g00068 1498 SMART DIL_2 1316 1422 IPR002710 -
Gabi4081g00068 1498 ProSiteProfiles IQ motif profile. 855 883 IPR000048 GO:0005515
Gabi4081g00068 1498 Pfam DIL domain 1317 1419 IPR002710 -
Gabi4081g00068 1498 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Gabi4081g00068 1498 Gene3D - 252 310 - -
Gabi4081g00068 1498 Gene3D Kinesin motor domain 65 662 IPR036961 -
Gabi4081g00068 1498 FunFam Myosin 2 312 431 - -
Gabi4081g00068 1498 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 Coils Coil 891 943 - -
Gabi4081g00068 1498 Gene3D - 666 733 - -
Gabi4081g00068 1498 FunFam Class V myosin 439 578 - -
Gabi4081g00068 1498 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Gabi4081g00068 1498 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4081g00068 1498 SMART iq_5 830 852 IPR000048 GO:0005515
Gabi4081g00068 1498 SMART iq_5 757 779 IPR000048 GO:0005515
Gabi4081g00068 1498 SMART iq_5 853 875 IPR000048 GO:0005515
Gabi4081g00068 1498 SMART iq_5 734 756 IPR000048 GO:0005515
Gabi4081g00068 1498 SMART iq_5 782 804 IPR000048 GO:0005515
Gabi4081g00068 1498 FunFam Myosin heavy chain 252 307 - -
Gabi4081g00068 1498 Gene3D - 439 623 - -
Gabi4081g00068 1498 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4081g00068 Gabi-Chr4081 582210 606030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4081g00068 1 1493 Myosins gene family AT5G43900 73.276 0.0 2268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4081g00068 K10357 - gmx:100795648 2595.85