Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4081g00054 ATGAATCACTGTGTTCCGGATTTCGGAATCCAAATGGATGACCAAGAAGAATACCAAATATCCATGCCTTCGGCTTCAGGGTTACCTCGCCTAAAGAAACCCTCCATTGCAGACGACGAGATCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATCCAGAGCCAGAACCACCGTCCTCAGAAAAAACTTCCGCCGCCGAGGAACTCCGACGATGCGATTCCCTCAACGACGAGGGAGATTCGACAAGAAGTAGAAAACTACGATCAACATCTCTTCATGAAAGAAGGCGAAATGAATTCTTGGCTTCACTATCCAATCGACGACGATGATCCTCCATTGGATCAAAGCTTCTGCGCCGATTTCTTCTACCCGCCGCCGATTGTTAACAACAACAACAACAGTGCCATGCAAACAACTGCGCGTGCGTCTCAACCTACGGAACTCCGGCAGCCTCCGAGGTCGGTGCCTCCTAAGCCTCCGATTCCGCCGGCGAGGAGGCCGGAGAAGGTGCCGGCGAAGACGCCGAACTTCGCGTACTTCTCGAAGCACAATGCGAGACCCGAGCTAGGGCCGTCGTCGAGTTCGAAGACCGCCGCGAGGGAATCAACGATGGTGGATTCGTGCGACACACCTGCCGCGACGGCGGCGGTGGAGGCTTCGAGAGGTTCTGAGACTGTCAGAAGCTCGGCGAATCCCACGGAAGATACTGCAGGCTTAGCGGCGCCTTCGACGACGTGTGCCAGCGGAGGAAGGGGTACGATGACGTGCGATGTGACGATGACGTCATCTCCGGGCGGTTCAAGTAGCAGTGGTGAACCGGTTCAGAGGGTGGTGGCACTGGACCGGAAACGGAAGGGTCGTGAAGCAGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGGAGAAAAACAAATTCGTGGATCAACATCAACAAAGAGATCCCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGTAGTAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGACAATTGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCAGTAATTCCATTTCCCAATATGTTAGCTGGTTCGGCTTTGCCAGCAGCTACTGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCATATGCCGCATGTTCCTGCGACTGATTCATCTAGAATGCAAGTAGCAAATCAGTCAGATAATAATATGCTCACCTCTGTTGGTACACCTGATCCGACTCAGTCACGTATCCCAAACTTCACCGATCCTTATCAACAATACCTTGGTCCACACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAATGAATCAACTAAATGTTAGCAAGCCAAGTACCAGTACAGCCCCTGAGAATCCAGAAAACCATTAG 1590 0.5075 MNHCVPDFGIQMDDQEEYQISMPSASGLPRLKKPSIADDEIMELLWQNGQVVIQSQNHRPQKKLPPPRNSDDAIPSTTREIRQEVENYDQHLFMKEGEMNSWLHYPIDDDDPPLDQSFCADFFYPPPIVNNNNNSAMQTTARASQPTELRQPPRSVPPKPPIPPARRPEKVPAKTPNFAYFSKHNARPELGPSSSSKTAARESTMVDSCDTPAATAAVEASRGSETVRSSANPTEDTAGLAAPSTTCASGGRGTMTCDVTMTSSPGGSSSSGEPVQRVVALDRKRKGREAEEWECQSEDVDFESAEGEKQIRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTIGMGIGMGMGMEMGMNRPVIPFPNMLAGSALPAATAAAHLGPRFPVPPFHMPHVPATDSSRMQVANQSDNNMLTSVGTPDPTQSRIPNFTDPYQQYLGPHQMQFQLMQNQAMNQLNVSKPSTSTAPENPENH 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4081g00054 529 MobiDBLite consensus disorder prediction 130 277 - -
Gabi4081g00054 529 MobiDBLite consensus disorder prediction 222 275 - -
Gabi4081g00054 529 CDD bHLH_AtPIF_like 321 384 IPR047265 -
Gabi4081g00054 529 SMART finulus 327 376 IPR011598 GO:0046983
Gabi4081g00054 529 FunFam Basic helix-loop-helix transcription factor 316 379 - -
Gabi4081g00054 529 MobiDBLite consensus disorder prediction 130 150 - -
Gabi4081g00054 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 387 IPR036638 GO:0046983
Gabi4081g00054 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 370 IPR011598 GO:0046983
Gabi4081g00054 529 MobiDBLite consensus disorder prediction 151 170 - -
Gabi4081g00054 529 MobiDBLite consensus disorder prediction 188 210 - -
Gabi4081g00054 529 Pfam Helix-loop-helix DNA-binding domain 325 371 IPR011598 GO:0046983
Gabi4081g00054 529 MobiDBLite consensus disorder prediction 297 320 - -
Gabi4081g00054 529 Gene3D - 316 379 IPR036638 GO:0046983
Gabi4081g00054 529 PANTHER TRANSCRIPTION FACTOR PIF3 28 474 IPR044273 GO:0003700|GO:0006355
Gabi4081g00054 529 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4081g00054 Gabi-Chr4081 385574 392527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4081g00054 1 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.526 4.82e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4081g00054 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4081g00054 - - gmx:100797225 682.945