Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Gabi4081g00053
ATGAATCACTGTGTTCCGGATTTCGGAATCCAAATGGATGACCAAGAAGAATACCAAATATCCATGCCTTCGGCTTCAGGGTTACCTCGCCTAAAGAAACCCTCCATTGCAGACGACGAGATCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATCCAGAGCCAGAACCACCGTCCTCAGAAAAAACTTCCGCCGCCGAGGAACTCCGACGATGCGATTCCCTCAACGACGAGGGAGATTCGACAAGAAGTAGAAAACTACGATCAACATCTCTTCATGAAAGAAGGCGAAATGAATTCTTGGCTTCACTATCCAATCGACGACGATGATCCTCCATTGGATCAAAGCTTCTGCGCCGATTTCTTCTACCCGCCGCCGATTGTTAACAACAACAACAACAGTGCCATGCAAACAACTGCGCGTGCGTCTCAACCTACGGAACTCCGGCAGCCTCCGAGGTCGGTGCCTCCTAAGCCTCCGATTCCGCCGGCGAGGAGGCCGGAGAAGGTGCCGGCGAAGACGCCGAACTTCGCGTACTTCTCGAAGCACAATGCGAGACCCGAGCTAGGGCCGTCGTCGAGTTCGAAGACCGCCGCGAGGGAATCAACGATGGTGGATTCGTGCGACACACCTGCCGCGACGGCGGCGGTGGAGGCTTCGAGAGGTTCTGAGACTGTCAGAAGCTCGGCGAATCCCACGGAAGATACTGCAGGCTTAGCGGCGCCTTCGACGACGTGTGCCAGCGGAGGAAGGGGTACGATGACGTGCGATGTGACGATGACGTCATCTCCGGGCGGTTCAAGTAGCAGTGGTGAACCGGTTCAGAGGGTGGTGGCACTGGACCGGAAACGGAAGGGTCGTGAAGCAGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGGAGAAAAACAAATTCGTGGATCAACATCAACAAAGAGATCCCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGTAGTAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGAGAGTGCAACGTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGACAATTGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCAGTAATTCCATTTCCCAATATGTTAGCTGGTTCGGCTTTGCCAGCAGCTACTGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCATATGCCGCATGTTCCTGCGACTGATTCATCTAGAATGCAAGTAGCAAATCAGTCAGATAATAATATGCTCACCTCTGTTGGTACACCTGATCCGACTCAGTCACGTATCCCAAACTTCACCGATCCTTATCAACAATACCTTGGTCCACACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAATGAATCAACTAAATGTTAGCAAGCCAAGTACCAGTACAGCCCCTGAGAATCCAGAAAACCATTAG
1608
0.5075
MNHCVPDFGIQMDDQEEYQISMPSASGLPRLKKPSIADDEIMELLWQNGQVVIQSQNHRPQKKLPPPRNSDDAIPSTTREIRQEVENYDQHLFMKEGEMNSWLHYPIDDDDPPLDQSFCADFFYPPPIVNNNNNSAMQTTARASQPTELRQPPRSVPPKPPIPPARRPEKVPAKTPNFAYFSKHNARPELGPSSSSKTAARESTMVDSCDTPAATAAVEASRGSETVRSSANPTEDTAGLAAPSTTCASGGRGTMTCDVTMTSSPGGSSSSGEPVQRVVALDRKRKGREAEEWECQSEDVDFESAEGEKQIRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRVQRMQMMSMGCGMVPMMFPGIQQYMPTIGMGIGMGMGMEMGMNRPVIPFPNMLAGSALPAATAAAHLGPRFPVPPFHMPHVPATDSSRMQVANQSDNNMLTSVGTPDPTQSRIPNFTDPYQQYLGPHQMQFQLMQNQAMNQLNVSKPSTSTAPENPENH
535
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Gabi4081g00053
535
MobiDBLite
consensus disorder prediction
130
277
-
-
Gabi4081g00053
535
MobiDBLite
consensus disorder prediction
222
275
-
-
Gabi4081g00053
535
SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain
319
380
IPR036638
GO:0046983
Gabi4081g00053
535
FunFam
Basic helix-loop-helix transcription factor
316
382
-
-
Gabi4081g00053
535
PANTHER
TRANSCRIPTION FACTOR PIF3
28
480
IPR044273
GO:0003700|GO:0006355
Gabi4081g00053
535
SMART
finulus
327
376
IPR011598
GO:0046983
Gabi4081g00053
535
MobiDBLite
consensus disorder prediction
130
150
-
-
Gabi4081g00053
535
Gene3D
-
316
382
IPR036638
GO:0046983
Gabi4081g00053
535
ProSiteProfiles
Myc-type, basic helix-loop-helix (bHLH) domain profile.
321
370
IPR011598
GO:0046983
Gabi4081g00053
535
MobiDBLite
consensus disorder prediction
151
170
-
-
Showing 1 to 10 of 16 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Gabi4081g00053
Gabi-Chr4081
385573
392524
Dispersed/Tandem
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Gabi4081g00053
1
375
Basic Helix-Loop-Helix Transcription Factor Gene Family
AT2G20180
42.636
7.14e-66
215
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
bHLH
Gabi4081g00053
HLH
1.2e-13
No_clan
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Gabi4081g00053
-
-
gmx:100797225
658.677
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows