Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi4081g00053 | ATGAATCACTGTGTTCCGGATTTCGGAATCCAAATGGATGACCAAGAAGAATACCAAATATCCATGCCTTCGGCTTCAGGGTTACCTCGCCTAAAGAAACCCTCCATTGCAGACGACGAGATCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATCCAGAGCCAGAACCACCGTCCTCAGAAAAAACTTCCGCCGCCGAGGAACTCCGACGATGCGATTCCCTCAACGACGAGGGAGATTCGACAAGAAGTAGAAAACTACGATCAACATCTCTTCATGAAAGAAGGCGAAATGAATTCTTGGCTTCACTATCCAATCGACGACGATGATCCTCCATTGGATCAAAGCTTCTGCGCCGATTTCTTCTACCCGCCGCCGATTGTTAACAACAACAACAACAGTGCCATGCAAACAACTGCGCGTGCGTCTCAACCTACGGAACTCCGGCAGCCTCCGAGGTCGGTGCCTCCTAAGCCTCCGATTCCGCCGGCGAGGAGGCCGGAGAAGGTGCCGGCGAAGACGCCGAACTTCGCGTACTTCTCGAAGCACAATGCGAGACCCGAGCTAGGGCCGTCGTCGAGTTCGAAGACCGCCGCGAGGGAATCAACGATGGTGGATTCGTGCGACACACCTGCCGCGACGGCGGCGGTGGAGGCTTCGAGAGGTTCTGAGACTGTCAGAAGCTCGGCGAATCCCACGGAAGATACTGCAGGCTTAGCGGCGCCTTCGACGACGTGTGCCAGCGGAGGAAGGGGTACGATGACGTGCGATGTGACGATGACGTCATCTCCGGGCGGTTCAAGTAGCAGTGGTGAACCGGTTCAGAGGGTGGTGGCACTGGACCGGAAACGGAAGGGTCGTGAAGCAGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGGAGAAAAACAAATTCGTGGATCAACATCAACAAAGAGATCCCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGTAGTAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGAGAGTGCAACGTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGACAATTGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCAGTAATTCCATTTCCCAATATGTTAGCTGGTTCGGCTTTGCCAGCAGCTACTGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCATATGCCGCATGTTCCTGCGACTGATTCATCTAGAATGCAAGTAGCAAATCAGTCAGATAATAATATGCTCACCTCTGTTGGTACACCTGATCCGACTCAGTCACGTATCCCAAACTTCACCGATCCTTATCAACAATACCTTGGTCCACACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAATGAATCAACTAAATGTTAGCAAGCCAAGTACCAGTACAGCCCCTGAGAATCCAGAAAACCATTAG | 1608 | 0.5075 | MNHCVPDFGIQMDDQEEYQISMPSASGLPRLKKPSIADDEIMELLWQNGQVVIQSQNHRPQKKLPPPRNSDDAIPSTTREIRQEVENYDQHLFMKEGEMNSWLHYPIDDDDPPLDQSFCADFFYPPPIVNNNNNSAMQTTARASQPTELRQPPRSVPPKPPIPPARRPEKVPAKTPNFAYFSKHNARPELGPSSSSKTAARESTMVDSCDTPAATAAVEASRGSETVRSSANPTEDTAGLAAPSTTCASGGRGTMTCDVTMTSSPGGSSSSGEPVQRVVALDRKRKGREAEEWECQSEDVDFESAEGEKQIRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRVQRMQMMSMGCGMVPMMFPGIQQYMPTIGMGIGMGMGMEMGMNRPVIPFPNMLAGSALPAATAAAHLGPRFPVPPFHMPHVPATDSSRMQVANQSDNNMLTSVGTPDPTQSRIPNFTDPYQQYLGPHQMQFQLMQNQAMNQLNVSKPSTSTAPENPENH | 535 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi4081g00053 | 535 | MobiDBLite | consensus disorder prediction | 130 | 277 | - | - | |
Gabi4081g00053 | 535 | MobiDBLite | consensus disorder prediction | 222 | 275 | - | - | |
Gabi4081g00053 | 535 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 319 | 380 | IPR036638 | GO:0046983 | |
Gabi4081g00053 | 535 | FunFam | Basic helix-loop-helix transcription factor | 316 | 382 | - | - | |
Gabi4081g00053 | 535 | PANTHER | TRANSCRIPTION FACTOR PIF3 | 28 | 480 | IPR044273 | GO:0003700|GO:0006355 | |
Gabi4081g00053 | 535 | SMART | finulus | 327 | 376 | IPR011598 | GO:0046983 | |
Gabi4081g00053 | 535 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
Gabi4081g00053 | 535 | Gene3D | - | 316 | 382 | IPR036638 | GO:0046983 | |
Gabi4081g00053 | 535 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 321 | 370 | IPR011598 | GO:0046983 | |
Gabi4081g00053 | 535 | MobiDBLite | consensus disorder prediction | 151 | 170 | - | - | |
Gabi4081g00053 | 535 | CDD | bHLH_AtPIF_like | 321 | 390 | IPR047265 | - | |
Gabi4081g00053 | 535 | MobiDBLite | consensus disorder prediction | 188 | 210 | - | - | |
Gabi4081g00053 | 535 | Pfam | Helix-loop-helix DNA-binding domain | 325 | 371 | IPR011598 | GO:0046983 | |
Gabi4081g00053 | 535 | Coils | Coil | 360 | 380 | - | - | |
Gabi4081g00053 | 535 | MobiDBLite | consensus disorder prediction | 297 | 320 | - | - | |
Gabi4081g00053 | 535 | MobiDBLite | consensus disorder prediction | 56 | 75 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi4081g00053 | Gabi-Chr4081 | 385573 | 392524 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi4081g00053 | 1 | 375 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G20180 | 42.636 | 7.14e-66 | 215 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Gabi4081g00053 | HLH | 1.2e-13 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi4081g00053 | - | - | gmx:100797225 | 658.677 |