LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4081g00053	ATGAATCACTGTGTTCCGGATTTCGGAATCCAAATGGATGACCAAGAAGAATACCAAATATCCATGCCTTCGGCTTCAGGGTTACCTCGCCTAAAGAAACCCTCCATTGCAGACGACGAGATCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATCCAGAGCCAGAACCACCGTCCTCAGAAAAAACTTCCGCCGCCGAGGAACTCCGACGATGCGATTCCCTCAACGACGAGGGAGATTCGACAAGAAGTAGAAAACTACGATCAACATCTCTTCATGAAAGAAGGCGAAATGAATTCTTGGCTTCACTATCCAATCGACGACGATGATCCTCCATTGGATCAAAGCTTCTGCGCCGATTTCTTCTACCCGCCGCCGATTGTTAACAACAACAACAACAGTGCCATGCAAACAACTGCGCGTGCGTCTCAACCTACGGAACTCCGGCAGCCTCCGAGGTCGGTGCCTCCTAAGCCTCCGATTCCGCCGGCGAGGAGGCCGGAGAAGGTGCCGGCGAAGACGCCGAACTTCGCGTACTTCTCGAAGCACAATGCGAGACCCGAGCTAGGGCCGTCGTCGAGTTCGAAGACCGCCGCGAGGGAATCAACGATGGTGGATTCGTGCGACACACCTGCCGCGACGGCGGCGGTGGAGGCTTCGAGAGGTTCTGAGACTGTCAGAAGCTCGGCGAATCCCACGGAAGATACTGCAGGCTTAGCGGCGCCTTCGACGACGTGTGCCAGCGGAGGAAGGGGTACGATGACGTGCGATGTGACGATGACGTCATCTCCGGGCGGTTCAAGTAGCAGTGGTGAACCGGTTCAGAGGGTGGTGGCACTGGACCGGAAACGGAAGGGTCGTGAAGCAGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGGAGAAAAACAAATTCGTGGATCAACATCAACAAAGAGATCCCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGTAGTAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGAGAGTGCAACGTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGACAATTGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCAGTAATTCCATTTCCCAATATGTTAGCTGGTTCGGCTTTGCCAGCAGCTACTGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCATATGCCGCATGTTCCTGCGACTGATTCATCTAGAATGCAAGTAGCAAATCAGTCAGATAATAATATGCTCACCTCTGTTGGTACACCTGATCCGACTCAGTCACGTATCCCAAACTTCACCGATCCTTATCAACAATACCTTGGTCCACACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAATGAATCAACTAAATGTTAGCAAGCCAAGTACCAGTACAGCCCCTGAGAATCCAGAAAACCATTAG	1608	0.5075	MNHCVPDFGIQMDDQEEYQISMPSASGLPRLKKPSIADDEIMELLWQNGQVVIQSQNHRPQKKLPPPRNSDDAIPSTTREIRQEVENYDQHLFMKEGEMNSWLHYPIDDDDPPLDQSFCADFFYPPPIVNNNNNSAMQTTARASQPTELRQPPRSVPPKPPIPPARRPEKVPAKTPNFAYFSKHNARPELGPSSSSKTAARESTMVDSCDTPAATAAVEASRGSETVRSSANPTEDTAGLAAPSTTCASGGRGTMTCDVTMTSSPGGSSSSGEPVQRVVALDRKRKGREAEEWECQSEDVDFESAEGEKQIRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRVQRMQMMSMGCGMVPMMFPGIQQYMPTIGMGIGMGMGMEMGMNRPVIPFPNMLAGSALPAATAAAHLGPRFPVPPFHMPHVPATDSSRMQVANQSDNNMLTSVGTPDPTQSRIPNFTDPYQQYLGPHQMQFQLMQNQAMNQLNVSKPSTSTAPENPENH	535

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gabi4081g00053	535	MobiDBLite	consensus disorder prediction	130	277	-	-
Gabi4081g00053	535	MobiDBLite	consensus disorder prediction	222	275	-	-
Gabi4081g00053	535	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	319	380	IPR036638	GO:0046983
Gabi4081g00053	535	FunFam	Basic helix-loop-helix transcription factor	316	382	-	-
Gabi4081g00053	535	PANTHER	TRANSCRIPTION FACTOR PIF3	28	480	IPR044273	GO:0003700\|GO:0006355
Gabi4081g00053	535	SMART	finulus	327	376	IPR011598	GO:0046983
Gabi4081g00053	535	MobiDBLite	consensus disorder prediction	130	150	-	-
Gabi4081g00053	535	Gene3D	-	316	382	IPR036638	GO:0046983
Gabi4081g00053	535	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	321	370	IPR011598	GO:0046983
Gabi4081g00053	535	MobiDBLite	consensus disorder prediction	151	170	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4081g00053	Gabi-Chr4081	385573	392524	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4081g00053	1	375	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G20180	42.636	7.14e-66	215

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Gabi4081g00053		HLH	1.2e-13	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4081g00053	-		-	gmx:100797225	658.677

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