LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4081g00031	ATGGCGGCATCGCGGCGGCTCCGGGACCTTCAATCACAACCGGCGAACAAGATTTGCGTCGATTGTTCCCAGAAGAACCCTCAATGGGCCTCAGTTTCATACGGAGTCTTCATGTGCTTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTTCACATCTCCTTCGTTCGATCCGTAACCATGGATGCATGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGTGGCAACGACAAACTCAACGCCTTCCTCGCTCAGTATGGTATCACCAAGGAAACTGACATCGTCACCAAGTACAACACCAACGCAGCCTCCATCTACCGCGATCGCATTCAGGCCATCGCCGACGGTCAACCCTGGCGGGATCCCCCTGTCGTCAAGGAGAATGTTCGCTCGGCCGCCGCCGGAAAGGGGGGAAAGCCGCCGTTGGCTGCTGGAAGCAACGCGAATAATAATGGAGGGTGGGATAATTGGGATAACGATGATGGTTTTGGATCTCGCAGCAACGATATCCGGCGCAACCAGTCGACCGGTGATGTTAGGGGGTTCGGTGGTGGCGGAAGCGCCCCGGCGAGGTCGAAGTCGACGGAGGATATATACACGCGGTCGCAATTGGAGGCCTCTGCTGCTGGCAAGGAGAGTTTCTTCGCTCAGAAGATGGCGCAAAATGAATCGCGACCCGAGGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGGTTCGGATCTAGCCCTGCCCCTGCTCAGAGGAGTAATCCTCAAAACGATTATCTCTCTGTCGTTTCTCAGGGAATCGGTAAATTATCTTTGGTTGCTGCCTCTGCTGCTCAGTCTGCTGCTAATGTTGTTCAGGCAGGCACAAAAGAGATCTCTGCTAAGGTAAAGGATGGTGGTTATGATCACAAGGTCAATGAAACTGTCAATGTTGTCACTCAGAAGACATCAGAGATTGGACAAAGGACGTGGGGTATGATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAGCTCACTAGAGATGACCCAAATTGGAAGTCTGGTAACTGGCAACGAAATGAAAATGATAGAGATGGTTTTTATCAGGAATTCAATCAAGAGAATAAAGGCTGGAATTCTTCTACCAGAGGAGGACAACCTTCATCAGGTGGACATACCAATACTTACAACTCAAGCTCTTGGGATGATTGGGACCACCAAGATTCTAGGAAGAAAGAACCAGCTAAAGGATCAGCTCCTCAGTCATCAGGGAACTTCGATACTAGTAACCCAAGTTCTTGGGATGATTGGGATCACAAGGATGCAAGGAAGGAAGAACCAGCTAAAGGATCAGCTCCCCATAACAGTGATAGTTGGGCTGGCTGGGATAATGCTAAAGATGATGGATTTGATAATTTCTACGGGAGTGCTTCTGATAATAAAGCTGTTGGTCATAATGGGAAGTCAGATGCTGCCTGGACAGGAGGAGGATTTCTCTAA	1482	0.5074	MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDKLNAFLAQYGITKETDIVTKYNTNAASIYRDRIQAIADGQPWRDPPVVKENVRSAAAGKGGKPPLAAGSNANNNGGWDNWDNDDGFGSRSNDIRRNQSTGDVRGFGGGGSAPARSKSTEDIYTRSQLEASAAGKESFFAQKMAQNESRPEGLPPSQGGKYVGFGSSPAPAQRSNPQNDYLSVVSQGIGKLSLVAASAAQSAANVVQAGTKEISAKVKDGGYDHKVNETVNVVTQKTSEIGQRTWGMMKGVMALASQKVEELTRDDPNWKSGNWQRNENDRDGFYQEFNQENKGWNSSTRGGQPSSGGHTNTYNSSSWDDWDHQDSRKKEPAKGSAPQSSGNFDTSNPSSWDDWDHKDARKEEPAKGSAPHNSDSWAGWDNAKDDGFDNFYGSASDNKAVGHNGKSDAAWTGGGFL	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4081g00031	493	Pfam	Putative GTPase activating protein for Arf	5	94	IPR001164	GO:0005096
	Gabi4081g00031	493	MobiDBLite	consensus disorder prediction	130	198	-	-
	Gabi4081g00031	493	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-
	Gabi4081g00031	493	MobiDBLite	consensus disorder prediction	368	493	-	-
	Gabi4081g00031	493	MobiDBLite	consensus disorder prediction	427	445	-	-
	Gabi4081g00031	493	SMART	arf_gap_3	1	120	IPR001164	GO:0005096
	Gabi4081g00031	493	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	417	IPR044519	GO:0005096\|GO:0016192
	Gabi4081g00031	493	MobiDBLite	consensus disorder prediction	368	396	-	-
	Gabi4081g00031	493	Gene3D	Arf GTPase activating protein	1	130	IPR038508	-
	Gabi4081g00031	493	CDD	ArfGap_ArfGap1	3	117	-	-
	Gabi4081g00031	493	MobiDBLite	consensus disorder prediction	220	254	-	-
	Gabi4081g00031	493	MobiDBLite	consensus disorder prediction	338	357	-	-
	Gabi4081g00031	493	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Gabi4081g00031	493	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Gabi4081g00031	493	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Gabi4081g00031	493	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	84	IPR001164	GO:0005096
	Gabi4081g00031	493	MobiDBLite	consensus disorder prediction	410	426	-	-
	Gabi4081g00031	493	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	107	IPR037278	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4081g00031	Gabi-Chr4081	252837	258196	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4081g00031	5	87	C2H2 Transcription Factor Family	AT4G05330	50.000	1.52e-22	96.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4081g00031	K12492		-	gmx:100778302	794.267