Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4081g00024 ATGACTTCATTCTTGAAGCCTGAGAATGCACTCAAAAGGGCGGAAGAATTAATCACTGTGGGGCAGAAGCAGGATGCCTTGCAGACACTTCATGACCTTATTACTTCAAAAAGATACAGAGCATGGCAGAAGACACTCGAAAGGATCATGTTCAAGTATGTAGAACTGTGTGTAGACATGCGTAAAGGGCGGTTTGCAAAGGATGGGCTCATTCAGTATCGGATCATATGTCAGCAAGTGAATGTTAGTTCGCTGGAGGAGGTGATCAAGCATTTCATGCACCTCTCAACTGAGAAAGCTGAACAAGCCCGTAGCCAGGCACAGGCATTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCAGATAAAAGGCCAGAGGATTTGATGCTAAGCTATGTCAGTGGGGAGAAAGGAAAGGACAGATCTGATCGGGAACTTGTCACCCCATGGTTTAAATTTCTTTGGGAAACATACAGGACAGTGCTTGAAATTTTACGGAACAACTCAAAACTGGAAGCCTTATATGCTATGACAGCTCATCGAGCTTTCCAGTTTTGTAAACAATATAAGCGAACAACGGAGTTCCGAAGACTATGCGAAATCATAAGAAACCATTTAGCCAATCTTAATAAATATCGGGACCAACGAGACAGACCAGATCTTTCAGCTCCGGAAAGCTTGCAACTTTATCTCGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTTCGATCTGTGGAAGATATACATGGACTAATGTGCTTGGTCAAGAAAACGCCCAAGTCATCCTTGATGGTTGTTTACTATGCTAAGCTGACAGAAATATTTTGGATATCATCAAGTTATTTATATCATGCATATGCATGGTTCAGGCTTTTTTTATTACAAAAAAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCGTCATCTGTTGTTCTGGCTGCACTTTCAGTGCCTCCTCATAATCGCACTCATGGTGCATCTCATTTAGAACTGGAGCATGAAAAGGAGAGAAATTTGAGGATGGCTAATCTCATTGGCTTTAATCTTGAAACTAAACCTGAAAGCCGAGAAGTGCTCTCAAGGTCATCACTTCTTGCTGAACTGGCATCCAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATTTACCATCTTTTGGAACATGAATTTCTTCCCTCGGATCTTGCATTAAAAGTGCTTCCCTTGTTAAATAAAATTGCAAAATTAGGGGGTAAGCTTTCCACTGCTTCATCTGTTCCAGAGGTGCAATTGTCTCAATATGTTCCAGCACTGGAAAAACTAGCTACCTTGAGGTTGCTGCAGCAGGTCTCTAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGGATGATTCCTTTCTTTGATTTTTCGGTGGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAGTTTGTGTCAATGAAAGTTGACCACATGGAAAATGTTGTAATTTTTTCCAAAATGAGTCTCGAGTCTGATGGCTTAGGGGATCACTTGGCCAATTTTGCTGAACAATTGAATAAGGCAAGACAAATGATTTATCCTCCAGATAGGAAGCCATCAAAAATTGGAGCTTTGCTTCCCACGTTGACTGAGGTTGTGGCCAAAGAACACAAGAGGCTTCTTGCTCGAAAATCGATTATTGAGAAGAGGAAAGAAGAGCAAGAACGACATCTTCTTGAAATGGAACGTGAGGAGGAGTCGAAGAGGTTAAGACTGCAAAAAATAACTGAAGAAGCAGAACAAAGAAGGCTTGCCACTGAGTATGAGCAGAGAAAAAATCAAAGGATCCTTAGGGAAATAGAGGAAAGAGAAAACGAAGAAGCTCAAGCTTTGCTTCAGGAAGCTGAAAAGCGTATTAAAAAGAAGGGGAAAAAGCCAATCATAGAGGGGGACAAAATGACCAAGCAGACCTTGATGGAGTTGACTTTGACTGAACAACTCCGCGAAAGACAGGAGATGGAAAAGAAACTACAAAAATTAGTTAAAACCATGGATTATTTGGAAAGAGCAAAAAGAGAAGAGGCTGCTCCCCTTATTGAAGCTGCCTATCAGCAGCGCCTAGTAGAAGAAAGGATTCTTCATGAGCGTGAGCAACAACAAGATGTTGAACAGAGCAAAAAGCAGCATGAGGGGGATCTTAAGGAGAAGGCGAGGCTTATTCGAATGATGGGTAATAAAGAGATATATCAAGAGAGAGTTGTCAGTCTGCGCCAAGCTGAATTTAGCAGATTGAGGAGAGAAAGGGAGGAGAGGATCTCTAGGATTTTACAGTCCAGGAAACAGGAGAGGGAAAAAATGAGGAAGTTAAAGTTTTATCTGAAGTTGGAAGATGAGAGACAACAAAAAGTGCGTGAGGAGGAAGAAGCTCGTAAGCGTGAAGAGGCTGAGAGACGAAAGAAGGATGAGGCTGAACGCCTAGCTAAGTTAGCTGAGATAGCTGAAAAGCAGAGGCAAAGAGAGCGGGAACTTGAAGAAAAAGAGAGACTTAGGAGGGAAGCACTGTTGTCTGGATCTAGACCTTCCGAACCACCTTTGAAGCCTTCTGAGCCTCCTGCCCGTTCATTGGAGCCTGGATCTGCTGCTCCTGCTGCAGCTGCAGCTGCTGCTGCTGCAGCCCCAGCCTCTGGGAAATATGTCCCTAAGTTCCGGCAAACAGGAGCTGAAACCACAGGGGCTCCTCCTCCTGAAACAGATAGGTGGAGTAACAGTAGCAGCAGGCCGGACGGTGACAGGTGGCGTAGTGACAATCGAAGAACCGCTTTTGGTTCTGGTGGGGGTTCAAGGTCATCTTCCACTTGGTCATCTTCCAGGACTCGTGATCGTTAA 2898 0.4344 MTSFLKPENALKRAEELITVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKSSLMVVYYAKLTEIFWISSSYLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHNRTHGASHLELEHEKERNLRMANLIGFNLETKPESREVLSRSSLLAELASKGVMSCVTQEVKDIYHLLEHEFLPSDLALKVLPLLNKIAKLGGKLSTASSVPEVQLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMKVDHMENVVIFSKMSLESDGLGDHLANFAEQLNKARQMIYPPDRKPSKIGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERHLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEERENEEAQALLQEAEKRIKKKGKKPIIEGDKMTKQTLMELTLTEQLRERQEMEKKLQKLVKTMDYLERAKREEAAPLIEAAYQQRLVEERILHEREQQQDVEQSKKQHEGDLKEKARLIRMMGNKEIYQERVVSLRQAEFSRLRREREERISRILQSRKQEREKMRKLKFYLKLEDERQQKVREEEEARKREEAERRKKDEAERLAKLAEIAEKQRQRERELEEKERLRREALLSGSRPSEPPLKPSEPPARSLEPGSAAPAAAAAAAAAAPASGKYVPKFRQTGAETTGAPPPETDRWSNSSSRPDGDRWRSDNRRTAFGSGGGSRSSSTWSSSRTRDR 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4081g00024 965 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Gabi4081g00024 965 Coils Coil 615 649 - -
Gabi4081g00024 965 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 958 IPR027512 GO:0005852
Gabi4081g00024 965 Coils Coil 667 694 - -
Gabi4081g00024 965 MobiDBLite consensus disorder prediction 806 859 - -
Gabi4081g00024 965 MobiDBLite consensus disorder prediction 806 965 - -
Gabi4081g00024 965 Coils Coil 568 602 - -
Gabi4081g00024 965 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Gabi4081g00024 965 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Gabi4081g00024 965 Gene3D - 268 342 - -
Gabi4081g00024 965 Gene3D - 352 496 - -
Gabi4081g00024 965 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Gabi4081g00024 965 Pfam PCI domain 373 510 IPR000717 -
Gabi4081g00024 965 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 936 IPR027512 GO:0005852
Gabi4081g00024 965 MobiDBLite consensus disorder prediction 944 958 - -
Gabi4081g00024 965 Coils Coil 796 856 - -
Gabi4081g00024 965 MobiDBLite consensus disorder prediction 927 941 - -
Gabi4081g00024 965 Gene3D UVR domain 217 267 - -
Gabi4081g00024 965 Coils Coil 93 120 - -
Gabi4081g00024 965 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4081g00024 1 963 Eukaryotic Initiation Factors Gene Family AT4G11420 70.896 0.0 1312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4081g00024 K03254 - gmx:100782598 1447.18