Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4081g00020 ATGGCGTTTTTCTCTGGAGTTCAGCAACTGATTCGCCGCTCATCAGTTCTTCCCTCGTATTTCACTTCGATTCGTCTCAGTTCAACTCTCACTTCCCCGAAACTTTTCATCAGCGGTCTTTCAAGATTGACAACAGATGAAAAACTTACGGAAACATTTTCTTCTTTTGGACAGCTGGTCGAAGCAAAGGTGATAACTGATAGAGCCTCTGGAAGATCGAAGGGATTTGGTTTTGTAACTTATGCAACCGTAGAAGAAGCCGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAACCAAGACCTCCTCAGCATTCACAGTCTCAGCCCTCTCAAACGGGTTTCACAGTTAACAAGACTATTGGGTGGTGTGGTTAA 420 0.431 MAFFSGVQQLIRRSSVLPSYFTSIRLSSTLTSPKLFISGLSRLTTDEKLTETFSSFGQLVEAKVITDRASGRSKGFGFVTYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQHSQSQPSQTGFTVNKTIGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4081g00020 139 SUPERFAMILY RNA-binding domain, RBD 32 133 IPR035979 GO:0003676
Gabi4081g00020 139 Gene3D - 26 132 IPR012677 -
Gabi4081g00020 139 FunFam RNA binding protein 20 133 - -
Gabi4081g00020 139 PANTHER NUCLEOLAR PROTEIN 8 18 138 - -
Gabi4081g00020 139 MobiDBLite consensus disorder prediction 110 131 - -
Gabi4081g00020 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Gabi4081g00020 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Gabi4081g00020 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4081g00020 Gabi-Chr4081 193461 195946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4081g00020 35 126 Eukaryotic Initiation Factors Gene Family AT3G16380 38.947 1.98e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4081g00020 - - gmx:100306326 221.861