Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4080g00002 ATGGCAAGCCAAGAACCATTGTCGCCCTCTTCTTCCTTTAGCTATGGATGGAAATACGATGTGTTTCTAAGCTTTAGAGGAGAAGATACTCGTCACGGTTTCACTGGCCATCTCTACAAAACTCTTCATGACAGGGGAATCCACACCTTCATTGATGACGAAGAGCTTCAAAGAGGAGAAGAAATCACACCGTCACTTCTCAAGGCTATTGAGGAATCCAGGATTGCCATTATTGTCTTCTCTACGAACTATGCTTCTTCTTCATTTTGCTTGGACGAACTAGTCCATATCCTTCACTGCATCAAGGAAAAAGGTCGGTTGGTTTTGCCAGTTTTTTATGACGTTGATCCTTCTCACGTGCGACATCAGAGAGATAGCTACGAAGAAGCACTCTCAACTCATGAGAAGAGGTTTAAGGATGACATGGAGAAGGTGCAGAAATGGAGGGTGGCTCTGCGTCAAGCAGCTGACTTGTCTGGCTTTCATTTCAAACAACAAGGTAGGAATGAGAACGAATATGAGTTTATTGAGAAAATTGCTAAAGTGGTCTCCAACAAGATTAATCGGGTTCCATTACATGTTGCGGATTATCCAGTTGGATTGGAGTCTAAAGTGCTACAAGTAATCTCACTTCTCAATGTTGGATCTGATGGAGTCCATATGATAGGGATCCATGGAATTGGTGGCATAGGGAAGACAACCGTTGCTCGAGCAATTTATAATTTGATTGCCGAATCATTTGAGGCTCTGTGTTTTCTTGATAATGTAAGAGAAAATTCAATTAAATATGGATTAGAACGTATCCAAGAGACACTTATTTCTAAAGTATTCGGAGAGAAGGATGTTAAGTTAGCTAGTGTGAATGAAGGAATTTCAATAATAGAGCATAGGCTCCACGGAAAGAAAGTTCTTGTGGTTCTTGATGATGTTGACAGACTGGACCAGTTGCGGGCAACTGTTGGAGGGCCTGACTGGTTTGGTTGTGGCAGCAAAATCATCATTACAACTAGGGACAAGCATTTGCTAACAAGACATGGGGTTGAGAAAACTTATGAGGTAGATGGGTTGAATAGAAAAGAAGCTCTTGAATTACTTTGTTGGAATGCTTTTAAAACTGACAAAGTTGATTTGAGTTATGTGGACATTTTAAACCGAGCAATAACTTTTGCTTCTGGCCTTCCACTCGCATTGGAGGTAATAGGTTCCTACTTGTTTGGGAAAAGGATACAAGAATGGAAATCTGCATTAGCTCAGTATGAGAGAATTCCTAATAAAGAGATCCAAAAGATACTTGAAATAAGTTTTCATTCTTTGGGGGAATATGAGCAGGAAATTTTTCTTCATATTGCTTGTTGCTTCAAAGGAAATCATCTAGCATATGTCAAAAAATTACTTCACGCTCATCATGGTTTCTGCCCAGAATATGGTATTGGAGTGCTGATTGAAAAGTCTCTCATAAAGATTGTGTATGGCCGCGTAACATTGCATGACCTGATAGAGGACATGGGTAAAGAAGTTGTCCGACAAGAAGCACCAAAAGATCCCGGCAAACGTAGTAGATTATGGTTCCCTGATGATATAGTTCAAGTTTTAGAAGATAATACGGGAACTAGTAGTATTCAAATCATAATTCTGGATTTCCTCAAATTTAAAGAAGTAGTAGAATGGGATGGAAACGGCTTCAAGCAGATGAAAAACCTGAAAACACTTATTATAAGAAATGCTCGTTTTTCTGAAGGCCCCAAACATCTTCCAAGTAGTTTGAGAGTACTGGAATGGTGGGAGTATCCTTCACCATCTTTACCATCTAATTTTAATCCAAAGAAACTTGTGATATTGGAGTTACCCCAAAGTCGCTTAGTGTCAATTGATTTGCTCATGTCAAATAAGGTGTTTGTGAATATGAAAGTTTTGAATTTTAATAATTGTCAATGTATAACAGAGATACCTGATGTGTCTGGAGTCCCAAATTTAGAAGAATTATCATTTGGATACTGTGAGAATTTAATTAAAATTCATGAATCGGTTGGATTCTTGAATGAACTTAAAATCTTGAATGCTGAAAGTTGCAAGAAGTTTAGGAGTTTTCCGCCCATCAAGTTGACCTCACTTGAAGAACTCATACTTTCATATTGTTCTAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAAAATAGGAACTCTTCATGTCTTTGACACTTGCATAAAAGAACTGCCATTTTCAATTCAAAACCTCACTCAGCTTGAAAGTATAGAACTGAAGCCTTGTGGAGGAATTTTTCAGTTACCAAGGAGCATTTTGATGTTGCGAGAGCTTTCTGAGTTGAATGTTTGGAATTGTGAGGGATTGCTTATATCTAAACAGGAGGAAGGTGATGATGCACAAGTGAGCTCTTTGGATTTTGAAATTAGCTTTTGGGATTGCAATATATCAGACGAATTTATTCGAAAAGGTCTCCCTTTATTTGTCAATAAGTTATACCTAACCGATAGTAATTTCACAATTCTTCCAGTATGCATCAGAGAATGTCTCTTTCTGACAGAAATTAAGTTATTTCGTTGCCAGAATTTTCGGGAAATTGGAGGGATTCCACCCAACTTAAAAAAATTCAAGGCAACAGAGTGCACATCCTTGAAAGATTTAGACCTTACACTATTTCCTGAATGCTTGGCGACACTTGACTTAGATAATTGCATGAATCTTCAAGAAATTAGAGGGATTTCACCCAACATAAGAACTTTGCGTACATCAGAATGCCCGTCCTTGACTTTCGAGTGTAGAAGCATGTTACTGAATAAGGAATTGCACAAGGAAGGTGGAGACAAAGTGTTTCTCTTGCCAGAAACAAGGATTCCAGAGTGGTGGTTTGAGAACTGTTTCAATGGACCGTCAATTTCTTTCAGGTTCCGTAACATGGATGTCCCTGCGATATCTATATGTTTTGTTATTCGACTCGATAATGTAAAATCAGGCACTGGTAGTGAGTATTGGCCCCGTTTTAAGCTCAATATTGAAGTCAACGGCATTTCAAAAGTTACAGGAGATGATTTCTCTTTGGGTTGCAAAGCAGGGGATTATACAGTTCTTTTTGATATAAAACAGGAAATATTCTTACTTGATGATGTTGTTCTTCTAGAAGAAAATAAATGGAATTATGTGGTGTGTACTATATCAAACAGAACAGACCCAGTGTTTGTCAAACAAAGTGGAATCCATGTATTCGAAGAAGGAAGGAGCATGGCGGACATTCAATTCACCGATCCACTGTTGCTGGAAGAAGAGCATAGATTGGTGGACATGGAAGATTCTCAGAGACATTTTGTGCAGCACCAAAATAATTTGGCTTCATTGCCTTTTTTGGAAACAATAAATTTGGGAAAGGGTAGAGGGTTGCTTTCATTGCTTCCACCTCCAGCATTGAATGATAATGTGAATTGGCATTCAAATTTAATGTTATCAAGGCTGAGATGTAGCACTCCTAATTTCCAAGGTTGTGAAATTGTGTCCAGAGAGAGGAAAATAGGTATGTTAAATTTGGACTTGAATAATGGAGCCAGTGAACCTTGTTCTCCTGCACCTTCAAAAGTTGTTTTCAATTCAGCAGTGTCAAGTTTTGCTAGTGGTGCCGCTGGTGAAGAAGGAGAATCTTCTCAAAATTGA 3669 0.3843 MASQEPLSPSSSFSYGWKYDVFLSFRGEDTRHGFTGHLYKTLHDRGIHTFIDDEELQRGEEITPSLLKAIEESRIAIIVFSTNYASSSFCLDELVHILHCIKEKGRLVLPVFYDVDPSHVRHQRDSYEEALSTHEKRFKDDMEKVQKWRVALRQAADLSGFHFKQQGRNENEYEFIEKIAKVVSNKINRVPLHVADYPVGLESKVLQVISLLNVGSDGVHMIGIHGIGGIGKTTVARAIYNLIAESFEALCFLDNVRENSIKYGLERIQETLISKVFGEKDVKLASVNEGISIIEHRLHGKKVLVVLDDVDRLDQLRATVGGPDWFGCGSKIIITTRDKHLLTRHGVEKTYEVDGLNRKEALELLCWNAFKTDKVDLSYVDILNRAITFASGLPLALEVIGSYLFGKRIQEWKSALAQYERIPNKEIQKILEISFHSLGEYEQEIFLHIACCFKGNHLAYVKKLLHAHHGFCPEYGIGVLIEKSLIKIVYGRVTLHDLIEDMGKEVVRQEAPKDPGKRSRLWFPDDIVQVLEDNTGTSSIQIIILDFLKFKEVVEWDGNGFKQMKNLKTLIIRNARFSEGPKHLPSSLRVLEWWEYPSPSLPSNFNPKKLVILELPQSRLVSIDLLMSNKVFVNMKVLNFNNCQCITEIPDVSGVPNLEELSFGYCENLIKIHESVGFLNELKILNAESCKKFRSFPPIKLTSLEELILSYCSSLENFPEILGKMEKIGTLHVFDTCIKELPFSIQNLTQLESIELKPCGGIFQLPRSILMLRELSELNVWNCEGLLISKQEEGDDAQVSSLDFEISFWDCNISDEFIRKGLPLFVNKLYLTDSNFTILPVCIRECLFLTEIKLFRCQNFREIGGIPPNLKKFKATECTSLKDLDLTLFPECLATLDLDNCMNLQEIRGISPNIRTLRTSECPSLTFECRSMLLNKELHKEGGDKVFLLPETRIPEWWFENCFNGPSISFRFRNMDVPAISICFVIRLDNVKSGTGSEYWPRFKLNIEVNGISKVTGDDFSLGCKAGDYTVLFDIKQEIFLLDDVVLLEENKWNYVVCTISNRTDPVFVKQSGIHVFEEGRSMADIQFTDPLLLEEEHRLVDMEDSQRHFVQHQNNLASLPFLETINLGKGRGLLSLLPPPALNDNVNWHSNLMLSRLRCSTPNFQGCEIVSRERKIGMLNLDLNNGASEPCSPAPSKVVFNSAVSSFASGAAGEEGESSQN 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4080g00002 1222 Pfam TIR domain 18 189 IPR000157 GO:0007165
Gabi4080g00002 1222 Gene3D Ribonuclease Inhibitor 720 937 IPR032675 -
Gabi4080g00002 1222 SMART till_3 18 158 IPR000157 GO:0007165
Gabi4080g00002 1222 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
Gabi4080g00002 1222 SUPERFAMILY L domain-like 508 931 - -
Gabi4080g00002 1222 Pfam NB-ARC domain 204 431 IPR002182 GO:0043531
Gabi4080g00002 1222 Gene3D - 15 183 IPR035897 -
Gabi4080g00002 1222 Gene3D - 184 349 IPR027417 -
Gabi4080g00002 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 449 IPR027417 -
Gabi4080g00002 1222 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 189 - -
Gabi4080g00002 1222 Gene3D - 355 439 IPR042197 -
Gabi4080g00002 1222 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 803 IPR044974 GO:0006952
Gabi4080g00002 1222 PRINTS Disease resistance protein signature 297 311 - -
Gabi4080g00002 1222 PRINTS Disease resistance protein signature 699 715 - -
Gabi4080g00002 1222 PRINTS Disease resistance protein signature 221 236 - -
Gabi4080g00002 1222 PRINTS Disease resistance protein signature 390 404 - -
Gabi4080g00002 1222 ProSiteProfiles TIR domain profile. 17 187 IPR000157 GO:0007165
Gabi4080g00002 1222 Gene3D Ribonuclease Inhibitor 529 719 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4080g00002 Gabi-Chr4080 5020 10465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4080g00002 8 783 WRKY Transcription Factor Family AT4G12020 30.314 3.48e-84 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4080g00002 - - gmx:121173697 1274.61