Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4080g00001 ATGGCAAGCCAAGAACCATTGTCGCCCTCTTCTTCCTTTAGCTATGGATGGAAATACGATGTGTTTCTAAGCTTTAGAGGAGAAGATACTCGTCACGGTTTCACTGGCCATCTCTACAAAACTCTTCATGACAGGGGAATCCACACCTTCATTGATGACGAAGAGCTTCAAAGAGGAGAAGAAATCACACCGTCACTTCTCAAGGCTATTGAGGAATCCAGGATTGCCATTATTGTCTTCTCTACGAACTATGCTTCTTCTTCATTTTGCTTGGACGAACTAGTCCATATCCTTCACTGCATCAAGGAAAAAGGTCGGTTGGTTTTGCCAGTTTTTTATGACGTTGATCCTTCTCACGTGCGACATCAGAGAGATAGCTACGAAGAAGCACTCTCAACTCATGAGAAGAGGTTTAAGGATGACATGGAGAAGGTGCAGAAATGGAGGGTGGCTCTGCGTCAAGCAGCTGACTTGTCTGGCTTTCATTTCAAACAACAAGGGAATGAGAACGAATATGAGTTTATTGAGAAAATTGCTAAAGTGGTCTCCAACAAGATTAATCGGGTTCCATTACATGTTGCGGATTATCCAGTTGGATTGGAGTCTAAAGTGCTACAAGTAATCTCACTTCTCAATGTTGGATCTGATGGAGTCCATATGATAGGGATCCATGGAATTGGTGGCATAGGGAAGACAACCGTTGCTCGAGCAATTTATAATTTGATTGCCGAATCATTTGAGGCTCTGTGTTTTCTTGATAATGTAAGAGAAAATTCAATTAAATATGGATTAGAACGTATCCAAGAGACACTTATTTCTAAAGTATTCGGAGAGAAGGATGTTAAGTTAGCTAGTGTGAATGAAGGAATTTCAATAATAGAGCATAGGCTCCACGGAAAGAAAGTTCTTGTGGTTCTTGATGATGTTGACAGACTGGACCAGTTGCGGGCAACTGTTGGAGGGCCTGACTGGTTTGGTTGTGGCAGCAAAATCATCATTACAACTAGGGACAAGCATTTGCTAACAAGACATGGGGTTGAGAAAACTTATGAGGTAGATGGGTTGAATAGAAAAGAAGCTCTTGAATTACTTTGTTGGAATGCTTTTAAAACTGACAAAGTTGATTTGAGTTATGTGGACATTTTAAACCGAGCAATAACTTTTGCTTCTGGCCTTCCACTCGCATTGGAGGTAATAGGTTCCTACTTGTTTGGGAAAAGGATACAAGAATGGAAATCTGCATTAGCTCAGTATGAGAGAATTCCTAATAAAGAGATCCAAAAGATACTTGAAATAAGTTTTCATTCTTTGGGGGAATATGAGCAGGAAATTTTTCTTCATATTGCTTGTTGCTTCAAAGGAAATCATCTAGCATATGTCAAAAAATTACTTCACGCTCATCATGGTTTCTGCCCAGAATATGGTATTGGAGTGCTGATTGAAAAGTCTCTCATAAAGATTGTGTATGGCCGCGTAACATTGCATGACCTGATAGAGGACATGGGTAAAGAAGTTGTCCGACAAGAAGCACCAAAAGATCCCGGCAAACGTAGTAGATTATGGTTCCCTGATGATATAGTTCAAGTTTTAGAAGATAATACGGGAACTAGTAGTATTCAAATCATAATTCTGGATTTCCTCAAATTTAAAGAAGTAGTAGAATGGGATGGAAACGGCTTCAAGCAGATGAAAAACCTGAAAACACTTATTATAAGAAATGCTCGTTTTTCTGAAGGCCCCAAACATCTTCCAAGTAGTTTGAGAGTACTGGAATGGTGGGAGTATCCTTCACCATCTTTACCATCTAATTTTAATCCAAAGAAACTTGTGATATTGGAGTTACCCCAAAGTCGCTTAGTGTCAATTGATTTGCTCATGTCAAATAAGGTGTTTGTGAATATGAAAGTTTTGAATTTTAATAATTGTCAATGTATAACAGAGATACCTGATGTGTCTGGAGTCCCAAATTTAGAAGAATTATCATTTGGATACTGTGAGAATTTAATTAAAATTCATGAATCGGTTGGATTCTTGAATGAACTTAAAATCTTGAATGCTGAAAGTTGCAAGAAGTTTAGGAGTTTTCCGCCCATCAAGTTGACCTCACTTGAAGAACTCATACTTTCATATTGTTCTAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAAAATAGGAACTCTTCATGTCTTTGACACTTGCATAAAAGAACTGCCATTTTCAATTCAAAACCTCACTCAGCTTGAAAGTATAGAACTGAAGCCTTGTGGAGGAATTTTTCAGTTACCAAGGAGCATTTTGATGTTGCGAGAGCTTTCTGAGTTGAATGTTTGGAATTGTGAGGGATTGCTTATATCTAAACAGGAGGAAGGTGATGATGCACAAGTGAGCTCTTTGGATTTTGAAATTAGCTTTTGGGATTGCAATATATCAGACGAATTTATTCGAAAAGGTCTCCCTTTATTTGTCAATAAGTTATACCTAACCGATAGTAATTTCACAATTCTTCCAGTATGCATCAGAGAATGTCTCTTTCTGACAGAAATTAAGTTATTTCGTTGCCAGAATTTTCGGGAAATTGGAGGGATTCCACCCAACTTAAAAAAATTCAAGGCAACAGAGTGCACATCCTTGAAAGATTTAGACCTTACACTATTTCCTGAATGCTTGGCGACACTTGACTTAGATAATTGCATGAATCTTCAAGAAATTAGAGGGATTTCACCCAACATAAGAACTTTGCGTACATCAGAATGCCCGTCCTTGACTTTCGAGTGTAGAAGCATGTTACTGAATAAGGAATTGCACAAGGAAGGTGGAGACAAAGTGTTTCTCTTGCCAGAAACAAGGATTCCAGAGTGGTGGTTTGAGAACTGTTTCAATGGACCGTCAATTTCTTTCAGGTTCCGTAACATGGATGTCCCTGCGATATCTATATGTTTTGTTATTCGACTCGATAATGTAAAATCAGGCACTGGTAGTGAGTATTGGCCCCGTTTTAAGCTCAATATTGAAGTCAACGGCATTTCAAAAGTTACAGGAGATGATTTCTCTTTGGGTTGCAAAGCAGGGGATTATACAGTTCTTTTTGATATAAAACAGGAAATATTCTTACTTGATGATGTTGTTCTTCTAGAAGAAAATAAATGGAATTATGTGGTGTGTACTATATCAAACAGAACAGACCCAGTGTTTGTCAAACAAAGTGGAATCCATGTATTCGAAGAAGGAAGGAGCATGGCGGACATTCAATTCACCGATCCACTGTTGCTGGAAGAAGAGCATAGATTGGTGGACATGGAAGATTCTCAGAGACATTTTGTGCAGCACCAAAATAATTTGGCTTCATTGCCTTTTTTGGAAACAATAAATTTGGGAAAGGGTAGAGGGTTGCTTTCATTGCTTCCACCTCCAGCATTGAATGATAATGTGAATTGGCATTCAAATTTAATGTTATCAAGGCTGAGATGTAGCACTCCTAATTTCCAAGGTTGTGAAATTGTGTCCAGAGAGAGGAAAATAGGTATGTTAAATTTGGACTTGAATAATGGAGCCAGTGAACCTTGTTCTCCTGCACCTTCAAAAGTTGTTTTCAATTCAGCAGTGTCAAGTTTTGCTAGTGGTGCCGCTGGTGAAGAAGGAGAATCTTCTCAAAATTGA 3666 0.3843 MASQEPLSPSSSFSYGWKYDVFLSFRGEDTRHGFTGHLYKTLHDRGIHTFIDDEELQRGEEITPSLLKAIEESRIAIIVFSTNYASSSFCLDELVHILHCIKEKGRLVLPVFYDVDPSHVRHQRDSYEEALSTHEKRFKDDMEKVQKWRVALRQAADLSGFHFKQQGNENEYEFIEKIAKVVSNKINRVPLHVADYPVGLESKVLQVISLLNVGSDGVHMIGIHGIGGIGKTTVARAIYNLIAESFEALCFLDNVRENSIKYGLERIQETLISKVFGEKDVKLASVNEGISIIEHRLHGKKVLVVLDDVDRLDQLRATVGGPDWFGCGSKIIITTRDKHLLTRHGVEKTYEVDGLNRKEALELLCWNAFKTDKVDLSYVDILNRAITFASGLPLALEVIGSYLFGKRIQEWKSALAQYERIPNKEIQKILEISFHSLGEYEQEIFLHIACCFKGNHLAYVKKLLHAHHGFCPEYGIGVLIEKSLIKIVYGRVTLHDLIEDMGKEVVRQEAPKDPGKRSRLWFPDDIVQVLEDNTGTSSIQIIILDFLKFKEVVEWDGNGFKQMKNLKTLIIRNARFSEGPKHLPSSLRVLEWWEYPSPSLPSNFNPKKLVILELPQSRLVSIDLLMSNKVFVNMKVLNFNNCQCITEIPDVSGVPNLEELSFGYCENLIKIHESVGFLNELKILNAESCKKFRSFPPIKLTSLEELILSYCSSLENFPEILGKMEKIGTLHVFDTCIKELPFSIQNLTQLESIELKPCGGIFQLPRSILMLRELSELNVWNCEGLLISKQEEGDDAQVSSLDFEISFWDCNISDEFIRKGLPLFVNKLYLTDSNFTILPVCIRECLFLTEIKLFRCQNFREIGGIPPNLKKFKATECTSLKDLDLTLFPECLATLDLDNCMNLQEIRGISPNIRTLRTSECPSLTFECRSMLLNKELHKEGGDKVFLLPETRIPEWWFENCFNGPSISFRFRNMDVPAISICFVIRLDNVKSGTGSEYWPRFKLNIEVNGISKVTGDDFSLGCKAGDYTVLFDIKQEIFLLDDVVLLEENKWNYVVCTISNRTDPVFVKQSGIHVFEEGRSMADIQFTDPLLLEEEHRLVDMEDSQRHFVQHQNNLASLPFLETINLGKGRGLLSLLPPPALNDNVNWHSNLMLSRLRCSTPNFQGCEIVSRERKIGMLNLDLNNGASEPCSPAPSKVVFNSAVSSFASGAAGEEGESSQN 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4080g00001 1221 SMART till_3 18 158 IPR000157 GO:0007165
Gabi4080g00001 1221 Pfam TIR domain 18 188 IPR000157 GO:0007165
Gabi4080g00001 1221 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
Gabi4080g00001 1221 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 782 IPR044974 GO:0006952
Gabi4080g00001 1221 Gene3D - 183 348 IPR027417 -
Gabi4080g00001 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 448 IPR027417 -
Gabi4080g00001 1221 Gene3D - 354 438 IPR042197 -
Gabi4080g00001 1221 Gene3D Ribonuclease Inhibitor 528 718 IPR032675 -
Gabi4080g00001 1221 SUPERFAMILY L domain-like 507 930 - -
Gabi4080g00001 1221 Gene3D Ribonuclease Inhibitor 719 936 IPR032675 -
Gabi4080g00001 1221 ProSiteProfiles TIR domain profile. 17 186 IPR000157 GO:0007165
Gabi4080g00001 1221 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 188 - -
Gabi4080g00001 1221 Pfam NB-ARC domain 203 430 IPR002182 GO:0043531
Gabi4080g00001 1221 Gene3D - 15 182 IPR035897 -
Gabi4080g00001 1221 PRINTS Disease resistance protein signature 220 235 - -
Gabi4080g00001 1221 PRINTS Disease resistance protein signature 698 714 - -
Gabi4080g00001 1221 PRINTS Disease resistance protein signature 389 403 - -
Gabi4080g00001 1221 PRINTS Disease resistance protein signature 296 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4080g00001 Gabi-Chr4080 5020 10465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4080g00001 8 782 WRKY Transcription Factor Family AT4G12020 30.201 1.27e-83 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4080g00001 - - gmx:121173697 1270.76