LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4076g00002	ATGGGTTGGCTTAGCAAAATTTTTAAAGGCTCTGACCATAAGATTTCAGAAGGGCATTATTATAAAGAGGATGCGGATTATTACTTGCCATCAACTTCAAAGGATGTTTGGTCCGAGAACGAGAATGAAGATATAGATCGTGCTATTGCACTATCTCTGGTAGAAGAAAATCAGAAAGCAAGCAATGTAAATGACTACAGGTCACAATTAGAAGAAGATGAACAACTTGCCAAAGCTATAGAAGAAAGCCTAAATTTGGAGTCTCCTCCCAGATATGGAAATGAAAATATGTATCAGCCTGTTCAGTATTTCCCAATGGGGTACAGGATTTGTGCTGGCTGCAATACTGAGATTGGTTATGGGCGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTACCAATATCAGATTATGAGTTCTCCACATCTGGAAATTACCCTTACCATAAATCCTGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGATCCAGAAATATTGCCCTGCTCATGAACATGATAGTACTCCACGCTGTTGCAGCTGTGAACGAATGGAGCCACGAGAGTCAGGATATATTGCTCTTAAAGATGGCCGGAAACTCTGCTTAGAGTGTCTGGACTCTGCTATCATGGATACTAATGAATGCCAACCCCTTTATGCCGATATACAAAAATTTTATGAAAGCCTGAATATGAAACTGGACCAGCAAGTTCCACTACTTCTGGTTGAAAGACAAGCACTGAATGAAGCAAGGGAGGGAGAGAAGAATGGCCACTATCACATGCCTGAGACCAGAGGACTTTGCCTCTCGGAGGAACTCAGCACTATCTCTAGACGACCTAGACTTGGGACAGGAAATAGAGCAATAGACATGAGATCACAACCATACAAATTGACTCCACGCTGTGATGTGACAGCAATTCTCATTTTGTATGGTCTTCCAAGGTTGCTTACTGGGTCGATCCTAGCTCATGAGATGATGCATGCATGGCTACGGCTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGCATCTGTCAGGTTTTGGCTCATATGTGGCTGGAGTCTGAACTCTCTTCTGCATCAGGCAGCAACTTTGTATCAGACTCATCCTCATCTGCATCATATGCATCTAGAAAAGGTAAAAGACCTCAATTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGATACAGAGCAGGTCAAAAAGCAGTGCATAAGTATGGTCTCCAACAGACCCTTCACCATATCAGGATGACGGGGAGTTTTCCATTTGAAGTATACAGATCCCCCATTTAA	1437	0.4252	MGWLSKIFKGSDHKISEGHYYKEDADYYLPSTSKDVWSENENEDIDRAIALSLVEENQKASNVNDYRSQLEEDEQLAKAIEESLNLESPPRYGNENMYQPVQYFPMGYRICAGCNTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPAHEHDSTPRCCSCERMEPRESGYIALKDGRKLCLECLDSAIMDTNECQPLYADIQKFYESLNMKLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNRAIDMRSQPYKLTPRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSDSSSSASYASRKGKRPQFERKLGEFFKHQIESDISPVYGDGYRAGQKAVHKYGLQQTLHHIRMTGSFPFEVYRSPI	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4076g00002	478	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	103	136	-	-
	Gabi4076g00002	478	ProSiteProfiles	Ubiquitin-interacting motif (UIM) domain profile.	40	59	IPR003903	-
	Gabi4076g00002	478	FunFam	Protein DA1-related 1	105	164	-	-
	Gabi4076g00002	478	ProSiteProfiles	LIM domain profile.	109	169	IPR001781	-
	Gabi4076g00002	478	PANTHER	PROTEIN DA1-RELATED 2	3	470	IPR045218	-
	Gabi4076g00002	478	SMART	lim_4	110	162	IPR001781	-
	Gabi4076g00002	478	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	137	191	-	-
	Gabi4076g00002	478	MobiDBLite	consensus disorder prediction	396	413	-	-
	Gabi4076g00002	478	ProSitePatterns	LIM zinc-binding domain signature.	111	145	IPR001781	-
	Gabi4076g00002	478	MobiDBLite	consensus disorder prediction	396	415	-	-
	Gabi4076g00002	478	Gene3D	Cysteine Rich Protein	106	184	-	-
	Gabi4076g00002	478	ProSiteProfiles	Ubiquitin-interacting motif (UIM) domain profile.	71	90	IPR003903	-
	Gabi4076g00002	478	CDD	LIM_DA1	111	163	-	-
	Gabi4076g00002	478	Pfam	LIM domain	111	165	IPR001781	-
	Gabi4076g00002	478	Coils	Coil	63	83	-	-
	Gabi4076g00002	478	Pfam	Protein DA1	261	466	IPR022087	-
	Gabi4076g00002	478	SMART	uim	71	90	IPR003903	-
	Gabi4076g00002	478	SMART	uim	40	59	IPR003903	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4076g00002	Gabi-Chr4076	42668	49020	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Gabi4076g00002		DA1-like	8.6e-96	CL0126

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4076g00002	-		-	gmx:100783253	863.988