Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4076g00001 ATGGGGCCTTCTCCAGCTTTCCTTTACACATGCAATGGCCTCAAAAAGTCTTGCATGGCCTTCCTCATTTTTAAATCTCAACCTCCTTACAACACCATCCCCACAATTTCAAATCTCACATCATCAAACCCTGAAGAGCTTGCCAGAATAAATGATGCCACTGTGCTCACAGTGTTCCCAACTGACAAAGAGGTTATAGTCCCTGTGAACTGTTCTTGTTTAACAAGAGATTATTACCAAGCTGAAACCAAATATGTCTTGGGTACATATCCAACATATTTTGCAGTAACAAATGATACTTTTCAGGGTTTGGCCACTTGTGATGCTCTCGAGCGTGCCAATCCATATGGGGAACTTGACTTGCATCCTGGGATGGAATTGCACGTGCCACTCAGATGTGCTTGTCCAACATGGCATCAGACAACAAATGGCACCAAGTATTTACTGACATACTCAGTGAACTGGGGTGATAGCATTTCAAATATTGCTACAAGATTCAATGTAGAACCAGGTATTCTAATTGATGCCAATGATTTTTCCACACAAACACAAACTCTTTTTCCATTCACAACTATTCTGATTCCTTTGCCAAGTGAACCAGTGAGTTCAATGACCATAGTTGCTAATGATCCACCAAACATGTCAACTCCACATGTTTGCAGCTCCAAAAGGTGCAAGTCAATGAGAAAACTCCACATCATTGTTGCCACCCTCGGGGGTTCCATGCTGGTTCTGTGTGTCATATTATCTGTGATGTTTCTGTTAAGAAAAAGATCAGCAAGGTTTTTTAAGCAAGATACAGAATATAAGAAAACAAAGAGGGTGTCTTCAGAAGATATCCGTGAGGAGATAGCAATCATTGAACATCATTCCAAAGTGTACAGGTTTGAGGAAATAAAGGCGGCCACTGAAGATTTTAGTTCAAAGAATAGAATTAAAGGTTCTGTATTTCGTGGGGTATTTGGCAATGGGAGGGGCATATTGGCTGTTAAAAAAATGAGAGGAGATGCGTCCAAGGAAGTCAATTTGCTGAAAAAGATCAATCATTTCAACCTGATAAAGCTGCAAGGTTACTGTAGAAACGATGGCTGCCTCTATCTTCTTTATGAATATATGGAAAATGGCTCTTTAAGAGAATGGCTTAGCAAAAACAGGTCCACGGAGCACCAGAGTTGGGCAAAGAGAATCCAGATTGCTGTGGATATTGCCAATGGACTTCAGTATCTTCACAACTTCACAGAGCCTTGCTATGTGCACAAGAACATAAACAGTGGAAACATCTTACTAAACAAAGACCTAAGGGCCAAGATAGCAAATTTTGCTCTTGCTGAAGAATCAGATAGGAAAATAACTTCCGGTTGTCCCACATCACATGTGGTGGGATCTAGGGGTTATATGGCTCCGGAGTATCTGGAGGCAGCGATAGTCACTACCAAAATGGATGTCTATGCTTTTGGAGTGGTGCTGTTGGAATTGATCACAGGTAAAGACTCTATTATTACCCTACAAGATGGAGTTATGGTAATGCTTCCTACAATAATTCTAAATCTCATTGGTAAAGAGAATGAAGAAGAGAAGGTGAGTTTGTTCATTGACCCTAGGCTCACTGGAAACTGTGGGAAAGTACCTGCTCTCCAGTTACTTAAACTAAGTCTATCCTGCTTGACCCAAGAACCAGAAAAGAGACCAAACACAGCAGAGGTTGTCTCTAGCTTATTGAAAATACAACAAATGATATGGACCAAAGAATACCACCCAGCATCAATAACAGTCTAG 1776 0.4088 MGPSPAFLYTCNGLKKSCMAFLIFKSQPPYNTIPTISNLTSSNPEELARINDATVLTVFPTDKEVIVPVNCSCLTRDYYQAETKYVLGTYPTYFAVTNDTFQGLATCDALERANPYGELDLHPGMELHVPLRCACPTWHQTTNGTKYLLTYSVNWGDSISNIATRFNVEPGILIDANDFSTQTQTLFPFTTILIPLPSEPVSSMTIVANDPPNMSTPHVCSSKRCKSMRKLHIIVATLGGSMLVLCVILSVMFLLRKRSARFFKQDTEYKKTKRVSSEDIREEIAIIEHHSKVYRFEEIKAATEDFSSKNRIKGSVFRGVFGNGRGILAVKKMRGDASKEVNLLKKINHFNLIKLQGYCRNDGCLYLLYEYMENGSLREWLSKNRSTEHQSWAKRIQIAVDIANGLQYLHNFTEPCYVHKNINSGNILLNKDLRAKIANFALAEESDRKITSGCPTSHVVGSRGYMAPEYLEAAIVTTKMDVYAFGVVLLELITGKDSIITLQDGVMVMLPTIILNLIGKENEEEKVSLFIDPRLTGNCGKVPALQLLKLSLSCLTQEPEKRPNTAEVVSSLLKIQQMIWTKEYHPASITV 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4076g00001 591 Pfam LysM domain 151 195 IPR018392 -
Gabi4076g00001 591 ProSiteProfiles LysM domain profile. 149 194 IPR018392 -
Gabi4076g00001 591 Gene3D LysM domain 138 205 IPR036779 -
Gabi4076g00001 591 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 578 - -
Gabi4076g00001 591 SUPERFAMILY Protein kinase-like (PK-like) 288 573 IPR011009 -
Gabi4076g00001 591 Gene3D Transferase(Phosphotransferase) domain 1 372 585 - -
Gabi4076g00001 591 FunFam PTI1-like tyrosine-protein kinase 3 372 585 - -
Gabi4076g00001 591 SUPERFAMILY LysM domain 149 195 IPR036779 -
Gabi4076g00001 591 ProSiteProfiles Protein kinase domain profile. 306 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4076g00001 591 Gene3D Phosphorylase Kinase; domain 1 265 371 - -
Gabi4076g00001 591 Pfam Protein tyrosine and serine/threonine kinase 334 572 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4076g00001 Gabi-Chr4076 40612 42387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4076g00001 7 575 Receptor kinase-like Gene Family AT2G23770 39.078 1.29e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi4076g00001 PK_Tyr_Ser-Thr 3.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4076g00001 - - gmx:100806221 895.19