Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4071g00064 ATGGATCGCCACCATCGCTCCACTGCTCGGCAAAGCTTGAAACGGAAGCGTGAACAAAACTTGAACGAAGACCATGGAGATCGCAAGGTTCTTGTTGTCCCTGATTCTCAAAAACCTTACCAAGATTTCTCCGATGAGATCTTTAAACAGGTGGAACTCCTCAATGTCTCTTTCTCACCTTCCCACTCAGATCTCACTATGGCAAAGACTGCGCTCAATGCCCTCTCGGAACTGGCCAAAAACGAGGACCTTGTGGATACTATTGTGGACTGTGGTGCTGTCCCTGTTCTGGTGACTCATCTTCAGGTCTTAAAGTCAGTAAGACGTGACACTGATGCAACCAAACCTTACCGGTTTTGTGTGGAGAGAGGATGTACCTTCGTCCTTACCTTACTTGCTGTTCAGCCAGAGCATCAAAAACTTATTGTAGATGCTGGAGCCTTGCCCTATCTTATAGATTTATTAAGGAGTCACGAGACCAATAACTTCTCTCAAGCGTTTGCTGATCTTCTTTGGAGAGTAGCTGATACAATTACCAACCTTGCACATGAAAATGATAGCATTAAGACCCTTGTCAGGACGGAAGGTGGTATTCCTCCTCTTGTCGAATTGCTAGAATACAATGATACAACGGTGCAGAGGGCAGCTGCTGGGGCCTTGCGAACTCTTGCATTTAAAAATGTTGACAATAAAAACCAGATTATTGAATGCGATGCGTTACCAACTCTTGTTCTAATGCTTCAATCAGAAGACCCGACAATACACCACGAAGCGGTTGGCGTGATTGGAAATTTGGTCCACTCTTCGCCAAATCTTAAGAAAGACGTTCTTCAAGCTGGGGCTTTACAACCTGTCATTTCGTTACTTAGTTCCTCCTGTTCGGAGAGCCAAAGAGAAGCAGCTCTTTTACTCGGTCAATTTGCTTCAACAGATTCAGATTGCAAGGTTCACATTGCCCAAAGAGGGGCTATTCAACCATTAGTTAACATGCTTAAGTCCCCCGATAAACAGCTTAGGGAAATGTCGGCTTTTGCGCTTGGGAGATTGGCGCAGGATTCACACAATCAAGCTGGTATTGCTCATAGTGGAGGTCTAGAGCCGCTATTAAATCTTCTTGGTTCAACGAATGTGCATCTCCAACATAATGCAGCTTTTGCTCTCTATGGTCTTGCTGATAATGAGGACAATGTTACATATATTATCAAGGCTGGAGGTTTACAAAAACTACAAGATGGATTTTTCAGAACTCAGCCTACTAAAGAGTGTGTGGCAAAGATCTTAAAAAGATTAGGGGAGAAGATGCAAGGGCGAGTACTGAAACACCTGTTACATCTAATGCACTTTGCAGAAAAGGATGTTCAAAGGCGTATAGCTCTTTCTCTTGCTCATTTGTGTTTCCCTGATGATCGAAAAACTATTTTCGTTGACAATAATGGATTAGAATTGCTGCTGGATCTTCTTGAGTCTACAAACCTAAAGCAGAAGGGTGATGGTTCAGTGGCGCTTCATAAGTTGGCTACCAGAGGCACGTCTGTCTCTCTCGATGATGCTGCTACTCCAACACCAACTCGCCAGGTGCATTTGGACGAGCAATATGTAAACAATCCTGACCTTTCTGATGTCACCTTCTTGGTTGAAGGTAAAAGGTTTTATGCTCATAGAGTTTGTTTACTGGCTTATGATATATTTCGCGCAATGTTGGATGGTGGTTACCGGGAAAGGGAAGCCAAAGAGATCGAGATTCCAAATATTAAATGGGATGTATTTGAGTTGATGATGAGATTTATATACGCTGGAACAGTAGATGTCAATTTGGATACTGCTCAGGATCTCCTCAGAGCTGCAGATCAGTATCTTCTAGACGATCTTAAGCGTCTTTGTGAACATGCTATTTCTCAGGATATTACTGTGAAAAATGTTTCACTAATGTACGATATATCAGAGGCATTCAATGCTACATCGTTAAAACATGCATGCGTACTCTTTGTGTTGGCGCACTTTGATGAACTGAGTACCAAACCATGGTATTGCCTCCTTCTTCGTTGCATTGTACCAAGCATGCGCAAATTCTTCACAACTTTACTTACCAAGCCTTATCCAGCTGACTCGTGA 2112 0.4304 MDRHHRSTARQSLKRKREQNLNEDHGDRKVLVVPDSQKPYQDFSDEIFKQVELLNVSFSPSHSDLTMAKTALNALSELAKNEDLVDTIVDCGAVPVLVTHLQVLKSVRRDTDATKPYRFCVERGCTFVLTLLAVQPEHQKLIVDAGALPYLIDLLRSHETNNFSQAFADLLWRVADTITNLAHENDSIKTLVRTEGGIPPLVELLEYNDTTVQRAAAGALRTLAFKNVDNKNQIIECDALPTLVLMLQSEDPTIHHEAVGVIGNLVHSSPNLKKDVLQAGALQPVISLLSSSCSESQREAALLLGQFASTDSDCKVHIAQRGAIQPLVNMLKSPDKQLREMSAFALGRLAQDSHNQAGIAHSGGLEPLLNLLGSTNVHLQHNAAFALYGLADNEDNVTYIIKAGGLQKLQDGFFRTQPTKECVAKILKRLGEKMQGRVLKHLLHLMHFAEKDVQRRIALSLAHLCFPDDRKTIFVDNNGLELLLDLLESTNLKQKGDGSVALHKLATRGTSVSLDDAATPTPTRQVHLDEQYVNNPDLSDVTFLVEGKRFYAHRVCLLAYDIFRAMLDGGYREREAKEIEIPNIKWDVFELMMRFIYAGTVDVNLDTAQDLLRAADQYLLDDLKRLCEHAISQDITVKNVSLMYDISEAFNATSLKHACVLFVLAHFDELSTKPWYCLLLRCIVPSMRKFFTTLLTKPYPADS 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4071g00064 703 MobiDBLite consensus disorder prediction 13 27 - -
Gabi4071g00064 703 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Gabi4071g00064 703 Pfam Armadillo/beta-catenin-like repeat 270 305 IPR000225 GO:0005515
Gabi4071g00064 703 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Gabi4071g00064 703 Pfam Armadillo/beta-catenin-like repeat 359 390 IPR000225 GO:0005515
Gabi4071g00064 703 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Gabi4071g00064 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 698 IPR044282 -
Gabi4071g00064 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Gabi4071g00064 703 Pfam BTB/POZ domain 531 633 IPR000210 GO:0005515
Gabi4071g00064 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Gabi4071g00064 703 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4071g00064 703 Gene3D Potassium Channel Kv1.1; Chain A 513 666 IPR011333 -
Gabi4071g00064 703 SUPERFAMILY ARM repeat 62 166 IPR016024 -
Gabi4071g00064 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Gabi4071g00064 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Gabi4071g00064 703 SUPERFAMILY POZ domain 529 632 IPR011333 -
Gabi4071g00064 703 SUPERFAMILY ARM repeat 171 505 IPR016024 -
Gabi4071g00064 703 SMART arm_5 185 225 IPR000225 GO:0005515
Gabi4071g00064 703 SMART arm_5 311 351 IPR000225 GO:0005515
Gabi4071g00064 703 SMART arm_5 81 134 IPR000225 GO:0005515
Gabi4071g00064 703 SMART arm_5 467 507 IPR000225 GO:0005515
Gabi4071g00064 703 SMART arm_5 227 267 IPR000225 GO:0005515
Gabi4071g00064 703 SMART arm_5 352 392 IPR000225 GO:0005515
Gabi4071g00064 703 SMART arm_5 269 309 IPR000225 GO:0005515
Gabi4071g00064 703 SMART arm_5 135 183 IPR000225 GO:0005515
Gabi4071g00064 703 Gene3D - 43 167 IPR011989 -
Gabi4071g00064 703 Gene3D - 295 512 IPR011989 -
Gabi4071g00064 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 224 IPR000225 GO:0005515
Gabi4071g00064 703 ProSiteProfiles BTB domain profile. 539 605 IPR000210 GO:0005515
Gabi4071g00064 703 Gene3D - 168 294 IPR011989 -
Gabi4071g00064 703 SMART BTB_4 539 635 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4071g00064 Gabi-Chr4071 617634 623509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4071g00064 282 510 U-box Gene Family AT1G23030 23.529 9.34e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi4071g00064 BTB 1.8e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4071g00064 - - cave:132170996 913.294