Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4071g00038 ATGCATCAGAATAATGAAGAGACACGCAGAGGTTTGAAAAGAAAGCCCCCAGAGTTGGATCGAGAGCAAGAAAATGGATCTTACAATATGAATTCTGGACCTTATGATAGGAACGCGCTTCCTTCTGGTTGGTTAGACTGCCCAGCACAGGGGCAAGAACTAGGATACATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTACATCCCAAGTCAAAAATATACTCCCAAGCAAGCAATTATTCAACAGAGAGTCTTAGGTAGAGAACTTGGTTTAGTGATTGATTTGACAAATACTACTCGCTACTATCCGGTGTCAGATTGGACGAAAGAAGGGGTTGGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCTGTACCTGATGATGAGTCTGTAAAAAAATTTTGTGATGAGGTTCTGGATTTTTGCTCCCGAAGAACAAACCCAAAGAAATATATACTCGTACATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCATTTTCTTGTCCGTACAGAATCAATTTCTGTCACCGAGGCAATAAATAAATTTGCTTGGGCACGTCACCCAGGAATATACAAGCAGGACTACATTGACGCCCTGTACATGTTTTATCACGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCAGAATGGAAGAGACTTTCTGATCCTGAATTTCATGGTGTGGCTGTCCCAGCTGTAGACAATTATGGAGACATTCCTCAGAAGGAGAATATTGTGAGGGATGAAGTGTTGACAAACGATGATGTTTTGGGAGAGCCCATTCCTTCGAACCAGCTACGTACAATGCAAGACGTTTGTTATCAATTGCTCAAGTTGGGCACAGGGGGTAGAGGACGTTCGCAGTTTCCTGGATCGCATCCTGTTTCTCTTAATAGGGACAATCTGCAACTCTTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACCCGATATATGATGCTGATTACTTTTGATGGATGTTATCTGATTGACAGAAAATTTCTTTTCAGAAAGATCAATATGCGGTTTCCTTGCAGATACTCAAATGGGAGTACACCTGAGAGGAATCACCATTACACATTACTTGACGGGGAGATGATTATTGACAAGGATCCACATACACAGAAGCAAGAGAGAAGATACCTCATTTATGACTTGGTGGCAATCAATCAAGTCTCTTTGACAGAGCTGCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGGGAGGGCCTTTCCAAGAGTATAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACGGTGTCAAAGCTCCTTCATAAATTCATTCCGCAACTCTCGCATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTTCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCCGAGATGAACTCTGTCGATTTCCACTTTGAGGTGGGAGCTGGTGATCGTCCCCTGCTTTATCTGTTCGAACGCGGAAAGAAGAAGTTAATGGAAGGGGATAATGTTGTTTTTAAAGATGCATCAGATATTTCTTCCTATTCAGGGAGGATCATAGAGTGCTACTGGGATCCTGTGGAGCATTATTGGGTCTGTATGCGGATCAGAGTCGACAAATCTACTCCAAATGATATCAACACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTCCTGTTGAATGAGATAAGTGAGATCATTCGCCTTCCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCACGTCGCAAGTGA 1899 0.4186 MHQNNEETRRGLKRKPPELDREQENGSYNMNSGPYDRNALPSGWLDCPAQGQELGYIIPSKVPLGESFNDYIPSQKYTPKQAIIQQRVLGRELGLVIDLTNTTRYYPVSDWTKEGVGHVKIRCKGRDSVPDDESVKKFCDEVLDFCSRRTNPKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFAWARHPGIYKQDYIDALYMFYHEKKPEDLVCPQTPEWKRLSDPEFHGVAVPAVDNYGDIPQKENIVRDEVLTNDDVLGEPIPSNQLRTMQDVCYQLLKLGTGGRGRSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITFDGCYLIDRKFLFRKINMRFPCRYSNGSTPERNHHYTLLDGEMIIDKDPHTQKQERRYLIYDLVAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGAGDRPLLYLFERGKKKLMEGDNVVFKDASDISSYSGRIIECYWDPVEHYWVCMRIRVDKSTPNDINTYRKVMRSIKDNITEDVLLNEISEIIRLPLYADRIQRDIKAHQHMVSSRRK 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4071g00038 632 Gene3D Protein tyrosine phosphatase superfamily 17 234 IPR029021 -
Gabi4071g00038 632 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 270 502 - -
Gabi4071g00038 632 Pfam mRNA capping enzyme, catalytic domain 303 501 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gabi4071g00038 632 CDD Adenylation_mRNA_capping 274 502 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gabi4071g00038 632 CDD RNA_5'-triphosphatase 43 209 - -
Gabi4071g00038 632 FunFam mRNA capping enzyme family protein 500 609 - -
Gabi4071g00038 632 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 40 228 IPR029021 -
Gabi4071g00038 632 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 205 IPR000387 GO:0016311|GO:0016791
Gabi4071g00038 632 ProSitePatterns Tyrosine specific protein phosphatases active site. 158 168 IPR016130 GO:0016311|GO:0016791
Gabi4071g00038 632 PIRSF mRNA_capping_HCE 27 632 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gabi4071g00038 632 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4071g00038 632 Gene3D - 500 609 IPR012340 -
Gabi4071g00038 632 SMART dsp_5 73 213 IPR020422 GO:0006470|GO:0008138
Gabi4071g00038 632 PANTHER MRNA-CAPPING ENZYME 35 613 - -
Gabi4071g00038 632 Pfam mRNA capping enzyme, C-terminal domain 506 600 IPR013846 -
Gabi4071g00038 632 FunFam mRNA capping enzyme family protein 36 248 - -
Gabi4071g00038 632 SUPERFAMILY Nucleic acid-binding proteins 504 617 IPR012340 -
Gabi4071g00038 632 FunFam mRNA capping enzyme, putative 262 499 - -
Gabi4071g00038 632 Pfam Dual specificity phosphatase, catalytic domain 92 211 IPR000340 GO:0008138|GO:0016311
Gabi4071g00038 632 Gene3D DNA ligase/mRNA capping enzyme 262 499 - -
Gabi4071g00038 632 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4071g00038 Gabi-Chr4071 346606 355872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4071g00038 29 622 Protein tyrosine phosphatase (PTP) family AT3G09100 63.455 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4071g00038 K13917 - gmx:100778292 1156.74