Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4071g00037 ATGAGCTATCACATGAATAATGAAGAGACACGCAGAGGTTTGAAAAGAAAGCCCCCAGAGTTGGATCGAGAGCAAGAAAATGGATCTTACAATATGAATTCTGGACCTTATGATAGGAACGCGCTTCCTTCTGGTTGGTTAGACTGCCCAGCACAGGGGCAAGAACTAGGATACATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTACATCCCAAGTCAAAAATATACTCCCAAGCAAGCAATTATTCAACAGAGAGTCTTAGGTAGAGAACTTGGTTTAGTGATTGATTTGACAAATACTACTCGCTACTATCCGGTGTCAGATTGGACGAAAGAAGGGGTTGGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCTGTACCTGATGATGAGTCTGTAAAAAAATTTTGTGATGAGGTTCTGGATTTTTGCTCCCGAAGAACAAACCCAAAGAAATATATACTCGTACATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCATTTTCTTGTCCGTACAGAATCAATTTCTGTCACCGAGGCAATAAATAAATTTGCTTGGGCACGTCACCCAGGAATATACAAGCAGGACTACATTGACGCCCTGTACATGTTTTATCACGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCAGAATGGAAGAGACTTTCTGATCCTGAATTTCATGGTGTGGCTGTCCCAGCTGTAGACAATTATGGAGACATTCCTCAGAAGGAGAATATTGTGAGGGATGAAGTGTTGACAAACGATGATGTTTTGGGAGAGCCCATTCCTTCGAACCAGCTACGTACAATGCAAGACGTTTGTTATCAATTGCTCAAGTTGGGCACAGGGGGTAGAGGACGTTCGCAGTTTCCTGGATCGCATCCTGTTTCTCTTAATAGGGACAATCTGCAACTCTTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACCCGATATATGATGCTGATTACTTTTGATGGATGTTATCTGATTGACAGAAAATTTCTTTTCAGAAAGATCAATATGCGGTTTCCTTGCAGATACTCAAATGGGAGTACACCTGAGAGGAATCACCATTACACATTACTTGACGGGGAGATGATTATTGACAAGGATCCACATACACAGAAGCAAGAGAGAAGATACCTCATTTATGACTTGGTGGCAATCAATCAAGTCTCTTTGACAGAGCTGCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGGGAGGGCCTTTCCAAGAGTATAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACGGTGTCAAAGCTCCTTCATAAATTCATTCCGCAACTCTCGCATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTTCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCCGAGATGAACTCTGTCGATTTCCACTTTGAGGTGGGAGCTGGTGATCGTCCCCTGCTTTATCTGTTCGAACGCGGAAAGAAGAAGTTAATGGAAGGGGATAATGTTGTTTTTAAAGGTTATGCATCAGATATTTCTTCCTATTCAGGGAGGATCATAGAGTGCTACTGGGATCCTGTGGAGCATTATTGGGTCTGTATGCGGATCAGAGTCGACAAATCTACTCCAAATGATATCAACACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTCCTGTTGAATGAGATAAGTGAGATCATTCGCCTTCCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCACGTCGCAAGTGA 1908 0.4182 MSYHMNNEETRRGLKRKPPELDREQENGSYNMNSGPYDRNALPSGWLDCPAQGQELGYIIPSKVPLGESFNDYIPSQKYTPKQAIIQQRVLGRELGLVIDLTNTTRYYPVSDWTKEGVGHVKIRCKGRDSVPDDESVKKFCDEVLDFCSRRTNPKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFAWARHPGIYKQDYIDALYMFYHEKKPEDLVCPQTPEWKRLSDPEFHGVAVPAVDNYGDIPQKENIVRDEVLTNDDVLGEPIPSNQLRTMQDVCYQLLKLGTGGRGRSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITFDGCYLIDRKFLFRKINMRFPCRYSNGSTPERNHHYTLLDGEMIIDKDPHTQKQERRYLIYDLVAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGAGDRPLLYLFERGKKKLMEGDNVVFKGYASDISSYSGRIIECYWDPVEHYWVCMRIRVDKSTPNDINTYRKVMRSIKDNITEDVLLNEISEIIRLPLYADRIQRDIKAHQHMVSSRRK 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4071g00037 635 PIRSF mRNA_capping_HCE 29 635 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gabi4071g00037 635 PANTHER MRNA-CAPPING ENZYME 37 616 - -
Gabi4071g00037 635 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 207 IPR000387 GO:0016311|GO:0016791
Gabi4071g00037 635 Pfam mRNA capping enzyme, C-terminal domain 508 603 IPR013846 -
Gabi4071g00037 635 Gene3D DNA ligase/mRNA capping enzyme 264 501 - -
Gabi4071g00037 635 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Gabi4071g00037 635 Pfam Dual specificity phosphatase, catalytic domain 94 213 IPR000340 GO:0008138|GO:0016311
Gabi4071g00037 635 SUPERFAMILY Nucleic acid-binding proteins 506 620 IPR012340 -
Gabi4071g00037 635 FunFam mRNA capping enzyme family protein 38 250 - -
Gabi4071g00037 635 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 230 IPR029021 -
Gabi4071g00037 635 MobiDBLite consensus disorder prediction 1 37 - -
Gabi4071g00037 635 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 272 504 - -
Gabi4071g00037 635 CDD Adenylation_mRNA_capping 276 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gabi4071g00037 635 Pfam mRNA capping enzyme, catalytic domain 305 503 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gabi4071g00037 635 CDD RNA_5'-triphosphatase 45 211 - -
Gabi4071g00037 635 Gene3D - 502 612 IPR012340 -
Gabi4071g00037 635 FunFam mRNA capping enzyme family protein 502 612 - -
Gabi4071g00037 635 FunFam mRNA capping enzyme, putative 264 501 - -
Gabi4071g00037 635 SMART dsp_5 75 215 IPR020422 GO:0006470|GO:0008138
Gabi4071g00037 635 Gene3D Protein tyrosine phosphatase superfamily 19 236 IPR029021 -
Gabi4071g00037 635 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4071g00037 Gabi-Chr4071 346606 355904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4071g00037 31 625 Protein tyrosine phosphatase (PTP) family AT3G09100 63.184 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4071g00037 K13917 - gmx:100778292 1155.58