Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4071g00009 ATGTCCCTTCTTTTCTATCTCCTCCTTCCCATCCTCATCCTAACTTTCCCAACCCCTTCCCTCACCCAAAACGCCACCGTTTCATGTCCCCTCAACATCACCGTCCTCACCGTCGTGGGCGGCGGTTCCAAACCCTCCTTCGACTCCGGAACACAGTGCCATTACATCCTCCAAGCACTCCATCTCCTCCAGGCCGATTACCTCCGCCGCACCGGCCTCTTCGTCCCTCCTCTCAACTCCTCCGAATCATGCTGGAACACTTTCCAATCCTTCATCGACCAATACGTACCAAACTTCGATATTCGCTCCTCCTGTGGCCTTCAAACCTCTTGGATCTCTCAGGGTTGCATGAACATCACGACCCTACAACAATTCGAAGCTTTTGTTCCCACCGCAGCACTTCAAGGCGTTCAAGGAAACTGTAACCAATCGCTTCAGAACAACGCGCCCTGCGCTCTCTGCACCACCAAGTTGTCAAGTTTATTATCCTACTTGACAGGAACAAGCGTTGGGAACGTTTCTGATTGCAGAGCTTATACCGCTATTTACGCCGCTTCTCTCTCCGGTCAATATGGACCCACTGACCCTGGAACCGCTCAGTGCTTGTTCGGGCTTGATTTTTCGTCTTCGGGTTCTAATCATAAGGTCGTTACTGTTGTTGTTTCGGTTATTTGTGTTTTCGGTTTATTAGTATTTGTTGGGGTTTGGGCTTATTGGAGATTGAAGCATAACAAGATTATGAGGGAGAATGGTATTATTGGTAATAGTAGGACTGAGATGGCTTTGGCTTCTGGGTTGGATTCGATTAACCAGAGCACTACTTTGATTAGGTTCACGTTTGATGATATTAGGAAGGCAACTAGGAACTTTTCAAGGGATAATATAATTGGGAGTGGGGGTTATGGGAATGTTTATAAAGGGGTTTTGATGGATGGTAGTCGAGTTGCAATGAAAAGGTTCAAGAATTGTTCTGTTGCTGGGGATGCAAATTTCACTCATGAAGTGGAGGTTATTGCAAGTGTTAGGCATGTGAATCTTGTTGCCCTGAGAGGTTATTGTACCGCAACTACTAATTTGGAAGGTCACCAGAGGATTATTGTTACTGACTTGATGGAAAATGGGAGTCTTTATGATCATTTATTTGGTTCTTCAAAGAAGAAACTCAGTTGGCCAATTCGACAACAGATTGCTCTAGGCACGGCTAGGGGTTTGGCTTATTTGCATTATGGGGCTCAACCTTCCATCATTCATAGGGATATTAAAGCTAGTAACATACTTCTTGATGAGAAGTTTGAAGCCAAGGTAGCTGATTTTGGGCTAGCAAAGTTTAACCCTGAGGGAATGACACATATGAGCACTAGAGTAGCTGGCACTATGGGGTATGTTGCACCTGAGTATGCTTTGTATGGGCAATTGACAGAGAGAAGTGATGTCTTTAGTTTTGGTGTTTTGCTTCTTGAGCTCTTGAGTGGGAAAAAAGCTCTTGAAACGGACCATGATGGCCAACCCTCTGCTCTCACTGACATGGCTTGGTCATTAGTTAGAAACACTAGAGCTTTGGATGTTATTGAAGATGATATGCCAGAACCTGGTCCCCAACAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTACTATGTTCACATCCACAGTTACATGCTAGGCCAACAATGGACCAGGTTGTAAAAATGCTGGAGACAGATGAATCAGTACCCTCAATACTTGAACGGCCAATTCCTTTTATTGCAGGGAGGATTGATATTGAGAAATCTGCCAGTAACTCGGGTCAGCTTTGCAGTCCAACCGGTTATCAAGCATATACATTAGGAAGTCACCGTACTTCTCATTCTAAGGAAGAAGAAGGAAGCTCGGGATCCGGGACTATGAGCACAGATTGA 1896 0.4515 MSLLFYLLLPILILTFPTPSLTQNATVSCPLNITVLTVVGGGSKPSFDSGTQCHYILQALHLLQADYLRRTGLFVPPLNSSESCWNTFQSFIDQYVPNFDIRSSCGLQTSWISQGCMNITTLQQFEAFVPTAALQGVQGNCNQSLQNNAPCALCTTKLSSLLSYLTGTSVGNVSDCRAYTAIYAASLSGQYGPTDPGTAQCLFGLDFSSSGSNHKVVTVVVSVICVFGLLVFVGVWAYWRLKHNKIMRENGIIGNSRTEMALASGLDSINQSTTLIRFTFDDIRKATRNFSRDNIIGSGGYGNVYKGVLMDGSRVAMKRFKNCSVAGDANFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKKLSWPIRQQIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGKKALETDHDGQPSALTDMAWSLVRNTRALDVIEDDMPEPGPQQVLEKYVLVAVLCSHPQLHARPTMDQVVKMLETDESVPSILERPIPFIAGRIDIEKSASNSGQLCSPTGYQAYTLGSHRTSHSKEEEGSSGSGTMSTD 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4071g00009 631 MobiDBLite consensus disorder prediction 609 631 - -
Gabi4071g00009 631 SUPERFAMILY Protein kinase-like (PK-like) 273 576 IPR011009 -
Gabi4071g00009 631 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 371 572 - -
Gabi4071g00009 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Gabi4071g00009 631 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 143 625 - -
Gabi4071g00009 631 CDD STKc_IRAK 296 565 - -
Gabi4071g00009 631 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 253 369 - -
Gabi4071g00009 631 Pfam SPARK 24 176 IPR043891 -
Gabi4071g00009 631 Gene3D Transferase(Phosphotransferase) domain 1 371 573 - -
Gabi4071g00009 631 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672|GO:0006468
Gabi4071g00009 631 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Gabi4071g00009 631 ProSiteProfiles Protein kinase domain profile. 290 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4071g00009 631 SMART serkin_6 290 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4071g00009 631 Gene3D Phosphorylase Kinase; domain 1 254 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4071g00009 Gabi-Chr4071 92898 95173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4071g00009 3 609 Receptor kinase-like Gene Family AT2G48010 60.976 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gabi4071g00009 PK_Tyr_Ser-Thr 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4071g00009 - - gmx:100819453 927.932