Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00057 ATGTCAGTGTACGATGCAGCTTTCGTTGACACAGAGCTCTCAAAACGCACCTCCATCTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCCTCGTCGGTTCCCTCATCGTCCTCACCCTCTTCCTCCTCTCTCTCTGCCTCACCTCCCGCCGCCGCAACAACAACAACCGCCACAACAACAAAAACAACAAGCTCCGCCACCCCACCGCCGCCGCCGCATCAGCCGCCACACCCGTCGTCTCCAAGGAAATCCAGGAGATCGTGCCGGCGCCGGCGGAGCACCGTGTGGTGGTGTACTCGGACAGGGTTTCGAGCGGGGAGAGTAAAACGGCGACGAGCGTGTGCGAAACGTCGTCGTCGTTGGGGAGTGGAAGCGTTGGGCCTGAAGTTTCGCATCTTGGGTGGGGAAGATGGTACACCTTAAGGGAACTTGAAGCTGCCACCAATGGATTGTGTGAGGAGAATGTGATTGGAGAAGGTGGCTATGGAATCGTGTATCGTGGGGTCCTCTTTGATGGCACCAAGGTTGCTGTTAAGAACCTTTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGAGCATATAGGATGCTTGTGTATGAATATGTTGACAATGGCAATCTGGAACAGTGGCTACATGGGGATGTTGGACCTGTAAGCCCTATGACATGGGAGATCCGAATGAACATTATATTGAGCACAGCAAAAGGATTGGCATATCTTCACGAGGGTCTTGAACCAAAAGTTGTCCACCGTGATGTGAAATCGAGCAATATACTCCTTGATCGCCAATGGAACTCGAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTATTCTGAGCATAGTTATGTCACTACTCGAGTGATGGGGACATTCGGTTATGTTGCACCAGAGTATGCTTGCACTGGAATGCTGACTGAGAAGAGTGATGTTTATAGCTTCGGGATACTAATCATGGAAGTAATTACTGGGAGAAGTCCTGTCGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAAACTATGGTTGGGAGTCGAAAAGCTGAGGAGGTAGTTGATCCTAAGCTTCCTGAGAAGCCATCTTCAAAGGCTCTTAAACGTGCTCTATTGGTTTCTCTACGATGTGTTGATCCTGATGCGGCAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGGCTGACGACCTCTTATTCCGTGATGATCGAAGGGTCGGGGGAGAATCTTCCCATTCCCATCATGATAATCAACAAGAGCATAAGGACTCAAGTTTAGTTAAAAAACCTATAGGTGGAGAAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGAAGTCACCATCAACCCACTAGGTGGAAATGA 1455 0.4852 MSVYDAAFVDTELSKRTSIFGLRLWVVIGILVGSLIVLTLFLLSLCLTSRRRNNNNRHNNKNNKLRHPTAAAASAATPVVSKEIQEIVPAPAEHRVVVYSDRVSSGESKTATSVCETSSSLGSGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGVLFDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPMTWEIRMNIILSTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLYSEHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEVITGRSPVDYSRPQGEVNLIEWLKTMVGSRKAEEVVDPKLPEKPSSKALKRALLVSLRCVDPDAAKRPKMGHVIHMLEADDLLFRDDRRVGGESSHSHHDNQQEHKDSSLVKKPIGGEEITDQSEDDSSRSHHQPTRWK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00057 484 ProSiteProfiles Protein kinase domain profile. 151 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00057 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Gabi4069g00057 484 Gene3D Transferase(Phosphotransferase) domain 1 227 433 - -
Gabi4069g00057 484 CDD STKc_IRAK 157 423 - -
Gabi4069g00057 484 MobiDBLite consensus disorder prediction 434 484 - -
Gabi4069g00057 484 FunFam Probable serine/threonine-protein kinase At1g01540 131 226 - -
Gabi4069g00057 484 FunFam Putative receptor-like serine/threonine-protein kinase 227 436 - -
Gabi4069g00057 484 PANTHER OS01G0323000 PROTEIN 8 451 - -
Gabi4069g00057 484 SMART serkin_6 151 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00057 484 SUPERFAMILY Protein kinase-like (PK-like) 129 423 IPR011009 -
Gabi4069g00057 484 Gene3D Phosphorylase Kinase; domain 1 132 226 - -
Gabi4069g00057 484 Pfam Protein kinase domain 154 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00057 484 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00057 Gabi-Chr4069 700758 703825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00057 26 477 Trihelix Transcription Factor Family AT5G38560 39.394 6.98e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gabi4069g00057 Pkinase 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00057 - - lang:109330952 736.487