Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00044 ATGGCTGCTGTTAGGTTTTCCTCTTTAAGACGCATACGGAGTTCAATCAATAGTTCCTTGAACACCGAATTAGCTAAAATTTCTCAAAATCGGTTTAGTAATTTGGCTTCTGAATCACTTGTTAGTAGTCACCTGTTTGTTCCCAAAACCAATGACTCACTGTATCCTAGATTCTCTAGCTTTTGCTTCCGGAGTACTCTTCCTTTTGCCTCCATGACCAACGTGTTGAGTAGCCGAACATATTCATCATCCGTGGGTGGCAAAGGAAGCAGTGATGGTGGTACAGAAGTTGCTGCTGCTGGTTCTGGTTCAGGTGACATGAATGCCAGTGGTGATTCTGTTGTTACTGGTGATTGGGCTGAGAAGATTCAGGATACTTGGAAGAATGCGGTAGAGACAGCATCGTATGCTGGGCAAAAGGTTAAAGAAGCTTCTGATGATCTGACTCCATATGCTCAGCAGTTGCTTGATTCACATCCATACCTTAACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACTCTGATAGCTTGGTTATTGATGCCTAGGGTTTTGAGAAAATTTCACAAATATGCAATGCGGGGTCCTGTTTCTCTATTTCCTGGAAGTATGTCTGGGGAGACAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGATCCAGTGCGATATTTAGTTACCTTCATGGCATTCTCGCAAATTGGTGTAATGGTAGCTCCAACAACTATAGCTGCACAGTATCTTGCACCAGCTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGAACGGACATTGTCCAGTCAAAGTTTACCTGGGCTTGATAGGGAGAAATTGCTGGCTCTAGACAAAATCTCATCTATTGGCCTGTTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTATAACTGTTGGTGGAATAGGAGGAGTGGCTACTGCTTTCGCTGCTAAAGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCGAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGTTCGATAGAAGGTCAAGTGGTGGAGATGGGTCTTACTACCACGTCATTGCTGAGTTCTGAGAAGTTCCCAGTCATTGTGCCAAACTCATTTTTTTCTAGCCAGGTTATAGTGAACAAGTCCCGTGCTGAATATCTAGCCATTATTACCAAAATTCCTCTGCAAATTGTGGATTTAAGTAAGATTCCCCAGATATCGGATGATGTAAAAAGCATGCTAAGATCAAATGCAAAAGTTTTCTTAGGAAAAGACATTCCCTACTGTTTCTTGTCGCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATATAACCTCAAACACATGCGCAAAGATGAGTTATACTCTGCAGAACAAGAAATTCTCCTACAGGCAGTTCACATCATTAAGAATCATGGCATTGCGTTAGGCAGCACATGGCAAGACACCTCTACTAAGTGA 1533 0.4188 MAAVRFSSLRRIRSSINSSLNTELAKISQNRFSNLASESLVSSHLFVPKTNDSLYPRFSSFCFRSTLPFASMTNVLSSRTYSSSVGGKGSSDGGTEVAAAGSGSGDMNASGDSVVTGDWAEKIQDTWKNAVETASYAGQKVKEASDDLTPYAQQLLDSHPYLNKVVIPVGGTLTATLIAWLLMPRVLRKFHKYAMRGPVSLFPGSMSGETVPYEKSFWGAMEDPVRYLVTFMAFSQIGVMVAPTTIAAQYLAPAWRGAVILSFVWFLHRWKTNVFERTLSSQSLPGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIITVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYLAIITKIPLQIVDLSKIPQISDDVKSMLRSNAKVFLGKDIPYCFLSRIESSYAELTLGYNLKHMRKDELYSAEQEILLQAVHIIKNHGIALGSTWQDTSTK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00044 510 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 119 503 - -
Gabi4069g00044 510 SUPERFAMILY Sm-like ribonucleoproteins 339 404 IPR010920 -
Gabi4069g00044 510 Pfam Mechanosensitive ion channel 297 499 IPR006685 GO:0016020|GO:0055085
Gabi4069g00044 510 Gene3D - 355 403 IPR023408 -
Gabi4069g00044 510 MobiDBLite consensus disorder prediction 83 111 - -
Gabi4069g00044 510 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 254 338 IPR011014 GO:0016020
Gabi4069g00044 510 Gene3D - 250 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00044 Gabi-Chr4069 582903 589752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00044 1 508 Mechanosensitive Ion Channel Family AT4G00290 57.171 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00044 K22047 - gmx:100789047 799.66