Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4069g00040 | ATGGCTTTGACCGAGGCTTGTGGTGTGGCTGTGCAATCTATTATAACTGTTGGTGGAATAGGAGGAGTAGCCACTGCTTTCGCAGCTAGAGACATTCTTGGCAATATGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCAATAGAGGGTCAAGTGGTGGAGATGGGTCTTATTACCACTTTATTGCGGACTTCTGAGAAGTTTCCAGTCATTGTGCCACACTCTTTTTTTACTAGCCAGGAAACTTCTGCTCTAGAGGATATGTAA | 300 | 0.4267 | MALTEACGVAVQSIITVGGIGGVATAFAARDILGNMFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLITTLLRTSEKFPVIVPHSFFTSQETSALEDM | 99 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4069g00040 | 99 | Gene3D | - | 47 | 94 | IPR023408 | - | |
| Gabi4069g00040 | 99 | Gene3D | - | 1 | 46 | - | - | |
| Gabi4069g00040 | 99 | SUPERFAMILY | Sm-like ribonucleoproteins | 31 | 91 | IPR010920 | - | |
| Gabi4069g00040 | 99 | PANTHER | YNAI-RELATED MECHANOSENSITIVE ION CHANNEL | 1 | 91 | - | - | |
| Gabi4069g00040 | 99 | Pfam | Mechanosensitive ion channel | 5 | 91 | IPR006685 | GO:0016020|GO:0055085 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4069g00040 | Gabi-Chr4069 | 548789 | 552530 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4069g00040 | 1 | 91 | Mechanosensitive Ion Channel Family | AT4G00290 | 79.121 | 3.07e-46 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4069g00040 | K22047 | - | gmx:100789047 | 154.836 |