Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00039 ATGGCTTTGACCGAGGCTTGTGGTGTGGCTGTGCAATCTATTATAACTGTTGGTGGAATAGGAGGAGTAGCCACTGCTTTCGCAGCTAGAGACATTCTTGGCAATATGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCAATAGAGGGTCAAGTGGTGGAGATGGGTCTTATTACCACTTTATTGCGGACTTCTGAGAAGTTTCCAGTCATTGTGCCACACTCTTTTTTTACTAGCCAGGTTATAGTGATCGAGTCCCGTGCCAAATATCGAGCCATTATTACTATAATTCGTCTGCTAATTGTGGATTTAAGTAAGATTCCCCGTATATCGGATGATTTAAAAAGCATGCTAAGATCAAATGCAAAAGTTTTCTTAGGAAAAGACATTCCCTACCGTGTCTTGTCGCGTAGAGAAAGTTCATATGCAGAATTGACTGTTCGATACAACCTCAAACACATGGTCCCTCACTCATCTGAATATGTAATTCCTTTTTGTTAG 534 0.4045 MALTEACGVAVQSIITVGGIGGVATAFAARDILGNMFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLITTLLRTSEKFPVIVPHSFFTSQVIVIESRAKYRAIITIIRLLIVDLSKIPRISDDLKSMLRSNAKVFLGKDIPYRVLSRRESSYAELTVRYNLKHMVPHSSEYVIPFC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00039 177 Gene3D - 1 46 - -
Gabi4069g00039 177 Gene3D - 47 94 IPR023408 -
Gabi4069g00039 177 SUPERFAMILY Sm-like ribonucleoproteins 31 93 IPR010920 -
Gabi4069g00039 177 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 1 165 - -
Gabi4069g00039 177 Pfam Mechanosensitive ion channel 5 167 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00039 Gabi-Chr4069 548789 552904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00039 1 165 Mechanosensitive Ion Channel Family AT4G00290 69.697 6.88e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00039 K22047 - gmx:100814954 255.758