Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00032 ATGGCTGCTATTAGCTTTTTCTCTTTAAGACGCCTACAAAGTTCAATCAATCTTTCCTTGAACATGGAATTAGCTAACTACAGTGTGGCTATGAACCTTACAAGAATTTCTCAGAATCGGTTTAGTAATTTGGCTTCTAATGCCTCATTGTATCCTAGATTCTCTAGCTTTTGCTTCCGGAGTACTCTTCCTTTTGCCTCCAACGTGTTGAATAGCCGAACGTATTCATCATCTGTGGGTGTCAAAGGAAGTGGTACAGAAGTTGTTCCTGGTTCTGGTTCAGGTGATTCTGTTGTTACGGGTGATTGGGCTGAGAAGATAGAAGATATTTGGAAGAGTGAGGTAGAGACAACATATGCTCAGCCGTTTGATTCACATCTATATCTTAACAATGTGGTTATTCCAGTTGGTGGCACTTTAATTGCTACTATGATAGCTTGGTTCTTGCTGCCTAGGGTTTTGAGGAAATTTCACAAATATGCAATGCAAGGTCCTGTTTCTCCATTTCCAGGAGGCATGTCTGTGGAGACAGTTCCTTATGAGAAAAGCTTTTGGGGGTCTATGGAAGACCCAGTTCGATATTTAGTTACCTTCATGGCATTCTCGCAAATTGGTGTAATGGTAGCTCCAACAACTTTAGCTGCACAGTATCTTCTGCCAGCTTGGAGGGGTGAAGGGATACTTTCATTTTTATGGTTTTTGCATAGATGGAAAGCAAATGTTTTTGAACGGACAATTCAAAGTTTACCAGGGCTTAGGGAGAAATTGCTGCCTTTACACAAAATCTCATCTATTGGCTTATTTGTGATTGGTATAATGGCTTTGCCCGAGCCTTCTGCTGTGGCTGTGCATTCTATTGTAGCTGTTGGTCGTGTGGGAGGTGTCACTACTGCTTTCGTTGCTACAGACATTTTTCGCGATGTGTTCGGTGGTTTATATTTGCAGTTTTCAAAGCCCTTTTCAACTGGAGATATAATACAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAGATGGGTCTTACTACCACGTCATTGCGGACTTCTGAGAAGTTTCCAGTCATTGTGCCAAACTCTTTTTTTACTAGCCAGCCTATAGTGAACGAGTCCCGTGCCGAATGTCGAGCCATTATTACTATAATTCCTATGCAAACTGTGGATTTAAGTAAGATTCCCCAGATATCAGATGATGTAGAAAGCATGCTAAGATCAAATGCAAAAGTTTTCTTAGGAAAAGACGTTCCTTCCTGTTGCTTGTCGTGTAAAGGATTGACTCTTAGATATAACCTCAAACGCATGTGCAAAGATGAGTTGTACTCTGCAGGACAAGAAATTCTCCTGCAGGCAGTTCACATCATTAAGAATAATGGCTGTGAGCCACTCAAGCACATGGCAAGACACCTCTACCAAGTGACATGA 1416 0.4181 MAAISFFSLRRLQSSINLSLNMELANYSVAMNLTRISQNRFSNLASNASLYPRFSSFCFRSTLPFASNVLNSRTYSSSVGVKGSGTEVVPGSGSGDSVVTGDWAEKIEDIWKSEVETTYAQPFDSHLYLNNVVIPVGGTLIATMIAWFLLPRVLRKFHKYAMQGPVSPFPGGMSVETVPYEKSFWGSMEDPVRYLVTFMAFSQIGVMVAPTTLAAQYLLPAWRGEGILSFLWFLHRWKANVFERTIQSLPGLREKLLPLHKISSIGLFVIGIMALPEPSAVAVHSIVAVGRVGGVTTAFVATDIFRDVFGGLYLQFSKPFSTGDIIQAGSIEGQVVEMGLTTTSLRTSEKFPVIVPNSFFTSQPIVNESRAECRAIITIIPMQTVDLSKIPQISDDVESMLRSNAKVFLGKDVPSCCLSCKGLTLRYNLKRMCKDELYSAGQEILLQAVHIIKNNGCEPLKHMARHLYQVT 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00032 471 Pfam Mechanosensitive ion channel 261 456 IPR006685 GO:0016020|GO:0055085
Gabi4069g00032 471 Gene3D - 319 367 IPR023408 -
Gabi4069g00032 471 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 104 457 - -
Gabi4069g00032 471 Gene3D - 226 318 - -
Gabi4069g00032 471 SUPERFAMILY Sm-like ribonucleoproteins 303 368 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00032 Gabi-Chr4069 493611 504549 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00032 103 456 Mechanosensitive Ion Channel Family AT4G00290 54.881 8.24e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00032 K22047 - gmx:100789047 557.755