Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00030 ATGGGTTTCCCGGTGGGTTACGCGGAGGTGTTCTTCCCCAACCTCTTCCTTCACGCCCTCACACTCCTCGGACTCCTCCGAAACCTCGTATTCCTCCTCTTCCACTTCCTCGGACTCTCCGACTTTCTCGAAACCGAGGTTGCCTGGCCCGACCCACGAACGCCCGACCCGACCAGGAGCCCCTCCGTGTCGGCGGTCCTCATCCGGGAGCTCCTTCCGGTAGCGAAGTTCGCCGAAGTCGCCGCCGGGAACAGCGCGAGCAGTTGCGCGGTGTGTCTGTTCGAGTTTTCCGAGGAGGAGGAGATCAGGTGCTTGAGGAACTGCAAGCACATTTTCCACCGGGGCTGTGTGGACCGTTGGATCGATCACGATCAGAAAACGTGCCCTCTTTGTAGGACCCCTTTTGTCCCTGATCATATGCTCGATGATTATAATCAACGACTCTGGGCTGCTTCTGGTTTTACTGATTTTAACGGAGACTACACTTCTTCTTCCTTCTAA 501 0.5649 MGFPVGYAEVFFPNLFLHALTLLGLLRNLVFLLFHFLGLSDFLETEVAWPDPRTPDPTRSPSVSAVLIRELLPVAKFAEVAAGNSASSCAVCLFEFSEEEEIRCLRNCKHIFHRGCVDRWIDHDQKTCPLCRTPFVPDHMLDDYNQRLWAASGFTDFNGDYTSSSF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00030 166 SMART ring_2 89 131 IPR001841 -
Gabi4069g00030 166 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Gabi4069g00030 166 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 151 - -
Gabi4069g00030 166 Pfam Ring finger domain 88 132 IPR001841 -
Gabi4069g00030 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 138 IPR013083 -
Gabi4069g00030 166 SUPERFAMILY RING/U-box 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00030 Gabi-Chr4069 462177 463147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00030 1 153 C3H Transcription Factor Family AT1G63840 49.682 5.44e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00030 K16281 - gmx:100790975 246.514