Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00027 ATGACATCCCCCAATCACCGCCGCCGGCGACCAAGCTCCGGCCACCGGAGCATGCCGGACCGCGTTCCTTACTCTCCCAGCTACCCCTCTTCCGAGGTCAGCACATCCCACCAGTCAACCTCCTCCGGCGGCCGGAGCACCGTTGCCGCCGCCGCCAGGACGGTCGCCGGAATGTTCACCGCTTGCTTCACGCCGCCGGAAGCCAACAGCTCGAAGAGCCTCGTGGATTCCGAGGTGTTCAAATCTTCTTCTGTTGCATCAAATGCTTCAAGAGCTGGTAGTCAGAGAGGGCGTGGCTCGAATCGAGGTATCAATGTCAGTTCATACAACTCAATCCAAGGGAAAGAGCCTGGCATTGTGAAGTTCACCATGGAGGAAATCTTCAAAGTCACAAGAAACTTCTCACCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGGGCAGTGTACAAGGCCAAACTCATGGATGGAACTGTTGTCGCGGTAAAGCGTGCTAAGAAGAGTGTGTATGAGAAACATTTGGGTGTGGAGTTCCAGAGCGAGATCCAAACACTATCAAGGGTTGAACATTTGAACTTGGTCAAGTTCTATGGATATTTAGAGCAAGAGGATGAAAGAATTGTTGTTGTGGAGTATGTTTCAAATGGAACCCTTAGAGAACATTTAGATTGCGTTCATGGAAACATTCTGGAGCTTGCTGCTCGTCTAGAAATTGCAATTGATGTGGCCCATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCCAACATTCTCCTCGCCGAAAATTTTCGAGCTAAGGTAGCGGACTTTGGTTTTGCTAGACAAGCACCTGACAGTGACTCTGGCATGACCCATGTATCCACCCAAGTTAAAGGAACAGCTGGCTACTTGGATCCTGAATACTTGAAAACTTATCAACTAACTGAAAAGAGTGACGTGTATTCATTTGGCGTGTTGCTTGTTGAACTTGTCACAGGAAGACGTCCCATTGAACCAAAATTTGAACTCAGGGAGCGAATAACAGCAAAATGGGCTATGAAGAGGTTTATTGATGGAGATGCCATCTCAGTCTTGGATCCAAGACTGGATCAGACTGCAGCAAATAGTTTGGCCCTAGAAAAGATACTTGAACTAGCTTTACAGTGCTTGGCTCCTCGTAGACAAAATAGGCCTAACATGAAGAGATGTGCTGAGATCCTTTGGGCCATCCGCAAGGACTATAGAGAGCTAGCAGCTTCAGACTTTCGCTCATTTTCCACTACTTCCCAAAGGAGCACTTCAATGAAAGAGTGA 1320 0.4727 MTSPNHRRRRPSSGHRSMPDRVPYSPSYPSSEVSTSHQSTSSGGRSTVAAAARTVAGMFTACFTPPEANSSKSLVDSEVFKSSSVASNASRAGSQRGRGSNRGINVSSYNSIQGKEPGIVKFTMEEIFKVTRNFSPSFKIGQGGFGAVYKAKLMDGTVVAVKRAKKSVYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQEDERIVVVEYVSNGTLREHLDCVHGNILELAARLEIAIDVAHAITYLHMYIDHPIIHRDIKSSNILLAENFRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELRERITAKWAMKRFIDGDAISVLDPRLDQTAANSLALEKILELALQCLAPRRQNRPNMKRCAEILWAIRKDYRELAASDFRSFSTTSQRSTSMKE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00027 439 Gene3D Phosphorylase Kinase; domain 1 96 211 - -
Gabi4069g00027 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Gabi4069g00027 439 MobiDBLite consensus disorder prediction 1 48 - -
Gabi4069g00027 439 SUPERFAMILY Protein kinase-like (PK-like) 110 412 IPR011009 -
Gabi4069g00027 439 Pfam Protein kinase domain 139 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00027 439 ProSiteProfiles Protein kinase domain profile. 134 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00027 439 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 212 423 - -
Gabi4069g00027 439 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 94 211 - -
Gabi4069g00027 439 ProSitePatterns Protein kinases ATP-binding region signature. 140 166 IPR017441 GO:0005524
Gabi4069g00027 439 PANTHER OS01G0750732 PROTEIN 30 427 - -
Gabi4069g00027 439 MobiDBLite consensus disorder prediction 85 108 - -
Gabi4069g00027 439 SMART serkin_6 134 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00027 439 MobiDBLite consensus disorder prediction 27 48 - -
Gabi4069g00027 439 CDD STKc_IRAK 140 409 - -
Gabi4069g00027 439 Gene3D Transferase(Phosphotransferase) domain 1 212 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00027 Gabi-Chr4069 382595 385649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00027 122 402 Receptor kinase-like Gene Family AT1G79620 47.018 5.66e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gabi4069g00027 Pkinase 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00027 - - gmx:100792034 682.945