Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00025 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCACCTGCATGGAACACCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCGTGAGTCGTTAACCTCTAATGATGGCACGGCTGCTTCACTCACTGCTGGATTGCTTGTAAGCTTGAACCTGGAAACATCCACACCTGATACTTACCAGCCCCCTCCTGCACCTTTGCCATATGATATGGTCCTTGGATGCCCAGCTTCAACAGATTCTGATTCAGGCAGAGAAACAGTTAGTGGTAGTAGTTTTGAAACTTTAATTACGTGTGATGATCTTGAAGAATCTGAGTGCAAAGCTCAAGCTAATTCTTCACCTATATCTCCAAGGAAGTCAGAACTGCCAAAATCAAATGAATCTCATGCATTAGTGACCGAAGAAGAGGACGTCTGTCCAATATGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACGAAATGCGAGCATCACTTTCATCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTGACCAGACACTGAACTAG 576 0.4323 MGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNDGTAASLTAGLLVSLNLETSTPDTYQPPPAPLPYDMVLGCPASTDSDSGRETVSGSSFETLITCDDLEESECKAQANSSPISPRKSELPKSNESHALVTEEEDVCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00025 191 MobiDBLite consensus disorder prediction 109 130 - -
Gabi4069g00025 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Gabi4069g00025 191 CDD RING-H2_AIRP1-like 136 184 - -
Gabi4069g00025 191 SMART ring_2 140 180 IPR001841 -
Gabi4069g00025 191 SUPERFAMILY RING/U-box 132 187 - -
Gabi4069g00025 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 187 IPR013083 -
Gabi4069g00025 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 188 - -
Gabi4069g00025 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Gabi4069g00025 191 Pfam Ring finger domain 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00025 Gabi-Chr4069 367237 372363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00025 1 191 C3H Transcription Factor Family AT4G00335 60.733 8.86e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00025 - - gmx:100792561 363.999