Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00023 ATGTCACTCATTTCTTTTCTTCTAACTGTAATTGTAACTATTTGTGCTGCTTCTTCTACTTCTTCCTTCACTCTCTCCTCAAATGACAACAACACCACCATTGTGATAAGAGGAGACACCACCATTCTAAGCGAAAACCGAACCTTCGAATTGGGTTTCTTCAACTTGAGTTCCAACCAACCTCACTGGTACCTTGCGATACGCTACGCTTCTCTTCCAACCCCAAACTTCGTCTGGGTCGCGAACCGCCACAAACCCATCACCAACCTCGCCGGTTCAACCCTCAAACTCACCCGAACCGGTCAGCTACTCCTCACTGACCCATCATCAAGTTCAATCCTTTGGCAAACCAACAACACCAACGACTCAAAGGGTGTTGATTTTGGTGTTGGTGTTGAGCTGAAGCTTCTTGAGAATGGGAACCTCGTTCTTCTCACCGGAAACGGCGACGTTTCGTGGCAAAGCTTCGATTACCCGACTGACACGTGGTTACCCGGAATGAACCTGACCCGGGTCCGATCCCTTGTTTCCTGGCGAACCGAAACGGACCCTTCCCCTGGTTTGTATTCCCTGCGGCTGAAACCACCGGATTACGGTGAGTTCGAGCTTGTCTTCAACGGCACCGTTTCGTATTGGTCAACCGGGAACTGGACAAACGGGTCGTTCCTCAACGTGCCGGAGATGACGATACCGTACATTTACCGGTTCGATTTCGAGGACCCGTTTTCTCCGACGGCGTCGTTTGGGTTCTCGGAGAGGCCGTTGGAGAGTGGGTTGAAGCCGCCGACGCTGTTCCGTGTGGAGCATTATGGGCAGGTTCGGCAGTACACGTGGGCGATGCAGGTAGGTTCGTGGAACATGTTCTGGTCCAAGCCTGATGGGGTTTGTCAGGTTCGGGGTTTGTGTGGTAGCTTCGGTGTCTGCAGTGGCGAAATCTCGAGGCTTTGTGAGTGTGTCCGTGGTTTTGAGCCTGTGGATGGTGATGGGTGGGGTTCTGGTGATTACTCCTTAGGTTGTCACCGTGAAGATGATGGAACCTGTGATGAAAGTGATGGTTTTGAAGATCTGGGTGTTGTTGGGTTTGAAGGTGGTAATTTTAGTTCTTTTAGAGCCAAGTCTAGAAGCTTTTGTGAGCGTAAATGTTTGGATTCTTGTGCTTGTGTTGGTTTGGATTTTGATGAAGGGAGTGGTTTTTGCAAGAATTTTTATGGGTCTCCTTTGGATTTTCAAAATTTAACTGCTTTTGGGGGATCTGGTGGTGGTGGTGGTGGTGGTGGGGTGCTTTTTGTTAGGGTTCCAAGAGTGGGGTCTGTGAAGAAGGGGTTTAGTAGTAAGGCTTTGAGTGCTGCTGTTATTGGGTCAGTTGCAGTTTTGGGTGTGGTGGTGATGGTGACATGGTTGGTGTTGCTCAAGAGGAGGCTGAAGAAGAAGGGGATGGAGGGAGATGGGTTTGTTCCTGTGTTGAATTTGCAGTTGTTTTCTTACAAGGAGCTTCAGTTGGCGACTCGAGGGTTTTCGGAGAAAGTTGGACATGGTGGGTTTGGGACGGTGTTTCAAGGGGAGTTGAGTGATTCTACACTTGTTGCTGTGAAGCGTTTGGAGAGGCCAGGGGGTGGAGAGAAAGAGTTCAGGGCTGAGGTTTCCACAATTGGGAATATTCAGCATGTTAATCTTGTGAGGCTCAGAGGGTTTTGTTCTGAGAATTCTCATAGGCTTTTGGTTTATGAGTTCATGCAGAATGGTGCCCTGAGTGCTTATCTGCGCAAAGAAGGGCCAACTTTGAGCTGGGATGTTAGGTTCCAGGTAGCAATTGGAACGGCCAAAGGGATAGCATATTTACATGAGGAATGTAGATGCTGCATTATCCACTGTGATATCAAACCTGAAAACATCCTTTTGGATAATGATTTCACTGCAAAAGTTTCCGATTTTGGATTAGCCAAGCTCATTGGCAGGGACTTCAGTAGGGTGTTGGCGACCATGAGGGGTACTTGGGGATATGTAGCTCCGGAGTGGATTTCTGGTGTGACAATTACCACCAAAGCTGATGTTTACAGCTACGGAATGACATTGCTAGAACTACTCAGTGGTCGTCGGAATGTGGAGGCACCGCCATCTGATGGTGGTAGAGAGAGTGGTTGTGAGACGGGAGAGAAGTGGTTCTTTCCTCCATGGGCTGCACAGCAGATAATAGAGGGTAATGTAACTGCTGTGATTGATAAGAAGCTTGTAAATGTATATAACATTGAGGAGGTTAGGAGGGCTGCTTTGGTGGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCTACTATGGGTATGGTGGTGAAAATGTTAGAGGGGCTAGTGGAGGTGACTATTCCTCCACCACCTAAGTTGCTACAAGCATTGGTTACTGGGGAGTCATTTCATGGGGTCAAGGTTGATTCTGGAAATGGGGTATCCACTGGTTGTAGCTTATCTGGTGGCAACTTGGAAGTGTCAACTGCTGATTCAGAATCATGTATAGGGGATGTTTTTTCCCCATTGGATGTCAATGTCAATGTCAATGTTCGATGA 2562 0.4817 MSLISFLLTVIVTICAASSTSSFTLSSNDNNTTIVIRGDTTILSENRTFELGFFNLSSNQPHWYLAIRYASLPTPNFVWVANRHKPITNLAGSTLKLTRTGQLLLTDPSSSSILWQTNNTNDSKGVDFGVGVELKLLENGNLVLLTGNGDVSWQSFDYPTDTWLPGMNLTRVRSLVSWRTETDPSPGLYSLRLKPPDYGEFELVFNGTVSYWSTGNWTNGSFLNVPEMTIPYIYRFDFEDPFSPTASFGFSERPLESGLKPPTLFRVEHYGQVRQYTWAMQVGSWNMFWSKPDGVCQVRGLCGSFGVCSGEISRLCECVRGFEPVDGDGWGSGDYSLGCHREDDGTCDESDGFEDLGVVGFEGGNFSSFRAKSRSFCERKCLDSCACVGLDFDEGSGFCKNFYGSPLDFQNLTAFGGSGGGGGGGGVLFVRVPRVGSVKKGFSSKALSAAVIGSVAVLGVVVMVTWLVLLKRRLKKKGMEGDGFVPVLNLQLFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSTLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEFMQNGALSAYLRKEGPTLSWDVRFQVAIGTAKGIAYLHEECRCCIIHCDIKPENILLDNDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVTITTKADVYSYGMTLLELLSGRRNVEAPPSDGGRESGCETGEKWFFPPWAAQQIIEGNVTAVIDKKLVNVYNIEEVRRAALVAVWCIQDDEAMRPTMGMVVKMLEGLVEVTIPPPPKLLQALVTGESFHGVKVDSGNGVSTGCSLSGGNLEVSTADSESCIGDVFSPLDVNVNVNVR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00023 853 Gene3D - 24 156 IPR036426 -
Gabi4069g00023 853 SMART blect_4 33 159 IPR001480 -
Gabi4069g00023 853 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Gabi4069g00023 853 Pfam D-mannose binding lectin 77 172 IPR001480 -
Gabi4069g00023 853 CDD B_lectin 35 159 IPR001480 -
Gabi4069g00023 853 SMART serkin_6 503 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00023 853 PIRSF SRK 1 833 IPR024171 GO:0004674
Gabi4069g00023 853 ProSiteProfiles Bulb-type lectin domain profile. 27 157 IPR001480 -
Gabi4069g00023 853 FunFam S-receptor-like kinase 5 578 789 - -
Gabi4069g00023 853 CDD STKc_IRAK 509 783 - -
Gabi4069g00023 853 Pfam Protein kinase domain 506 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00023 853 SUPERFAMILY Protein kinase-like (PK-like) 486 781 IPR011009 -
Gabi4069g00023 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Gabi4069g00023 853 Gene3D Phosphorylase Kinase; domain 1 471 577 - -
Gabi4069g00023 853 FunFam Receptor-like protein kinase 4 467 577 - -
Gabi4069g00023 853 ProSiteProfiles Protein kinase domain profile. 503 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00023 853 ProSiteProfiles PAN/Apple domain profile. 347 413 IPR003609 -
Gabi4069g00023 853 PANTHER OS07G0415500 PROTEIN 3 793 - -
Gabi4069g00023 853 Gene3D Transferase(Phosphotransferase) domain 1 578 787 - -
Gabi4069g00023 853 Pfam S-locus glycoprotein domain 212 324 IPR000858 GO:0048544
Gabi4069g00023 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 217 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00023 Gabi-Chr4069 354997 357804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00023 493 790 Receptor kinase-like Gene Family AT5G20050 45.016 1.98e-79 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4069g00023 Pkinase 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00023 - - lja:Lj0g3v0252549.1 1295.41