Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00022 ATGCTAGGTGATGGGCAGCATGTGGATTTGTACAAGCTGTTCATGGTTGTGAAGGGGAAAGGTGGGTACGATGCTGTTTGCGATGGGAAGTTGTGGGATGTGGTTGGGGAGGAATCTGGGTTGGGTGTGAGTGTTGGTTCTTCTGTGAAGCTGGTTTATAGTAAGTACTTGAGTGCTTTGGATGCTTGGATGAAGAAAGTTGCTGACAGTAAGGTACCCTTTGAGCGTAGTTTGGTGGATGATAAGGATAAGTTCGGTAGGCATTTGATGGAGTTGCAAGCCGAGGTGAAAGGGTTGTTGTCGGATTGTGCCACGGAGGATGAGGTCGCCGGAGAGGAGTTCAAGAGTGGATTTGATGATGAATACAAGGATGGGAGGGTGTTGTGTGGTACTAATGGGATGAAGGGTTTGAATCTAGAGTCTAATGGTGACGAAGAAGTGAGGAATGGAGGATGTCCGGATTCAGAAATGCTGGACCACAGGATGAATGAGTCTGTTCTTGGAAACTTATGCGAGGGAAATGATGCAATAGTAGTACTGGATGAGTTTGATGGAGAAAAAATGTCTGTGGAGCCGACAGTGGATGTATCTGATGCGGGGAACAGCAGTATGCCTGGATTGTTGAGTGAAGGCGAGAAGTGTGACGATGATGATGGTGATTTGGTGGTATTGGATCCATCTTCTGGTGATACAGAGAGTACTGGTGGTTGTAAGAGGAAGAGAGAGTCTATGTTGGATTTGCTGAGTTGGATTACTCGTGTTGCTAGGAATCCTTGTGATCCTGTGGTTGGTTCTATACCTGAAAAGCCGAAGTGGAAGTCTTGCAGTAATCAGGAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAGTTTGTGTTTCTCAAAAGGGATTTTGAGGCTACCAGTGAAAATCGTAGTTGGCAGACGCAGAAGATGCATCCGAGCTTGTATGATGATCACCTTGGGGCAACTTATAATCTTAGGGAGAGGTCGAAATGTGACAAGAAGACTTTATTTCCAAAACCTACATCAGCTGTACGAAGCTCTTCAGAGTCATCTGTAGGAACCGGAGTAGATTTCAATAGAACACCAAGTCCTCATACTGAAGATCGTGCTGAGAAACAGTTTCTTCATTCCTCTGATGTACATTCAGGTCTTGATGGATGTGTGAGAGTGATCATTCCTTTGGGTCCAAATCATCAAGCTGAAGTACCAGAATGGACTGGCATGACTTCTGAAAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTACAGACAAAGTAAATTCTAGATTTCTTATTGAAAGGGACCCCATGGGAAAGGGAAGACAAGATTCTTGTGGCTGCTCAGTACCAGGTTCTGTTGAGTGTATCAGATTTCACATTAGTGAGAAAAGGTCTAAAGTCAAGCTGGAACTGGGTTTGGCTTTTTTTCAATGGAATTTTGACAAGTCAGGTGAAGACGTTGCGAAATTGTGGAAGGATGAAGATGAGAAAAAATTCAAGGAAGTAGTGCAATCAAACCCTCCATCATCTGAGAGTTATTTTTGGGATCATATTTTTCCATCATTTCCTCATAAGAGCAGGGAAGATTTAGTTAGCTACTACTTCAATGTCTTTCTTTTGCACCGCCGAGGATACCAGAATAGGCATACTCCGGACAACGTTGACAGTGATGATGATGGATCCGAATGTGGGCCATTGAGGAATGTTTTTGGACATCAAACACAGAAATCACGCAGCTCCATCTTATTAACCCCCAAAAAGCCACAGACAAAGGGAAGATAG 1788 0.4407 MLGDGQHVDLYKLFMVVKGKGGYDAVCDGKLWDVVGEESGLGVSVGSSVKLVYSKYLSALDAWMKKVADSKVPFERSLVDDKDKFGRHLMELQAEVKGLLSDCATEDEVAGEEFKSGFDDEYKDGRVLCGTNGMKGLNLESNGDEEVRNGGCPDSEMLDHRMNESVLGNLCEGNDAIVVLDEFDGEKMSVEPTVDVSDAGNSSMPGLLSEGEKCDDDDGDLVVLDPSSGDTESTGGCKRKRESMLDLLSWITRVARNPCDPVVGSIPEKPKWKSCSNQEIWKQVLLFREFVFLKRDFEATSENRSWQTQKMHPSLYDDHLGATYNLRERSKCDKKTLFPKPTSAVRSSSESSVGTGVDFNRTPSPHTEDRAEKQFLHSSDVHSGLDGCVRVIIPLGPNHQAEVPEWTGMTSESDSKWLGTQIWPTDKVNSRFLIERDPMGKGRQDSCGCSVPGSVECIRFHISEKRSKVKLELGLAFFQWNFDKSGEDVAKLWKDEDEKKFKEVVQSNPPSSESYFWDHIFPSFPHKSREDLVSYYFNVFLLHRRGYQNRHTPDNVDSDDDGSECGPLRNVFGHQTQKSRSSILLTPKKPQTKGR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00022 595 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Gabi4069g00022 595 Gene3D - 1 73 IPR036431 GO:0003677
Gabi4069g00022 595 SMART bright_3 1 66 IPR001606 GO:0003677
Gabi4069g00022 595 MobiDBLite consensus disorder prediction 571 595 - -
Gabi4069g00022 595 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
Gabi4069g00022 595 MobiDBLite consensus disorder prediction 337 369 - -
Gabi4069g00022 595 MobiDBLite consensus disorder prediction 341 362 - -
Gabi4069g00022 595 CDD ARID 4 61 - -
Gabi4069g00022 595 CDD SANT 493 540 IPR001005 -
Gabi4069g00022 595 SMART ELM2_2 393 444 IPR000949 -
Gabi4069g00022 595 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 592 - -
Gabi4069g00022 595 SUPERFAMILY ARID-like 4 71 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00022 Gabi-Chr4069 311288 316094 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi4069g00022 ARID 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00022 - - gsj:114390964 726.087