Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00018 ATGCAGTCTGGTGGCGGCGGTGGCGGTGGGCCAGGCCGGAACCCCGGAGTGGGGCCGGCTGGGCGGGCGGCGGCTTCGACGTCATCGGCGGCTGCGTCACCATCTTCTTCGTCTTCGGCATCGCAGTTGGGGTTGGACTCATTGCAGCAGCAGCAGCAGCAGCAGCATCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTACTTAGAAAACCTGAAGGGAATGAAGCTTTTTTAGCTTATCAAGCAGGACTTCAAGGGGTATTTGGGAGTAACAATTTTTCATCTCCTGGTGCCATGCAACTGCCCCAGCAGTCTCGAAAATTCATTGATATAGCTCATCATGGTTCCAACCAGGATGCTCAGTTAAGGGGTCAAGGTATTGAGCAGCAAATGCTAAATCCTGTCCATCAAGCATACCTTCAATATGCTCTACAGGCTGCACAACAAAAGTCTGCTTTGGGAATTCAGTCACAGCAGCAAACTAAAATGGGAATGTTAAACCCTTCTTCTCTGAAGGATCAGGAAGTGCGTATGGGAAATTTGAAGATACCGGACATTATGTCTATGCAGGGGGTGAATCAAGCTCAAGGATCATCCTCTAGGAATTCATCTGAACATGTTGCTCGTGGGGAAAAGCAGTTGGAGCAAGGACAGCAGATAGCACCCGATCAGAAGAGTGAAGGAAAGCCTTCAACCCAGGGACCAGCCATCACACACTTTATTCCTGGAAATATGGTAAGACCCATGCAAGCACCAGAAACTCAGCAGGGCATCCAAAATGTTGTGAATGCGCAGATTGCAGTATCTGCTCAATTGCAGGCTATGCAGGCATGGGCACGTGAACGTAATATTGATTTATCACATCCTGCAAATGCACACTTAATGGCTCAGCTCATTCCACTGATGCCGTCAAGGACGGTCTCACAACCAAAGGTCAATGAAAGCAACATTGGTGCTCAGTTATCTCCTGTCCCTGTTTCAAAGCAGCAGGTAACTTCTCCAGCTGTTGCAAGTGAGAGCTCAGCACATGCTAATTCACCAAGTGATGCATCTGGGCAGTCAGGTTCTTCAAAAGCCAGGCAGACAGTTCCACACAGTCATCTTGGTTCAACAATAAATGCTGGTATAGCTGGTAACTCCAGGGACATGGCAATGCAGCAATTCAGTGTTCATGGCAGAGAGTCTCAAGCTCCTATGAGGCAACCAGTATTAGTTGGAACTGGAATGCCCTCTATGCATTCTCAGCAGTCTTCTGCCAACATGAACTTAGGTGCAGACAATCCTTTGAATGCAAAAACTTCATCATCTGGTCCGGAGCCTCCTCAAATGCCGTACATCAGGCAGTTAAACCAATCTGCTCCTCAGTCTGGAGGTCCAACAAACGAAGGGGGTTCAGGAAATTATGCTAAATCTCCAGGGACACCAGCTCAAATACCTCAGCAACGAAATGGATTTACCAAACAACAGCTACATGTTCTTAAAGCGCAGATACTAGCATTTAGGCGGCTGAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCGGGCTATTGTTCCAGCACCTCTTGAGATGCAGGCGCAACACCCAAATCATCTTCCAGGAGGACAAAATCAAGACAAATCTGCTGGAAATATTGTGGCAGAACAACCAAGGCACATTGAGTCCAATGCAAAGGAGTCACAATCTATCCCTGCTATTAATGGACAGAGTTCTTTAAAGCAGGAATCCTTTGCCCGAGATGAGAAATCTACCACACCACCAGTTCATATTCAAGCTATTATGCCACCTATGTCAAAAGAATCTGCTCCAACGTTATCTGCTGGAAAGGAAGAGCATAAATCAATGGGATGCTCTGTTAAGTCAAACCAGGACAGTGAACGTGGGAACAGCAGTACTCCAGTTAGAAACGAGTTAGCATTAGATAGAGGAAAGGGTATTGCATCACAGGCTTCTGTATCTGACACAATGCACATTAAGAAACCTGCACAAGCAAGTACTGTTTCCCAGCCAAAGGATGTAGAATCCACCAGAAAATATCATGGACCCTTATTTGATTTTCCTTTCTTCACTAGGAAACATGACTCCTTTGGGTCATCAATGATTTTAAACAACAACAATAATTTGTCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGAATGGAAGTACTTAATAAGAAACGGACAGAAAATTTAAAGAAGATTGAAGGTTTATTGGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTGAGGCTGCAAATTGAAGAGAAAAAACTTCGCCTTTTAGATCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAGCGTCAACGTATGGAACTTGCTAGACAAGTACAGGCATCACAGAGAGCTGTAAGGGAGAAGCAACTCAAATCAGTATTTCAGTGGCGTAAAAAGCTTCTTGAGGCACACTGGGCTATTCGTGATGCGCGTACTGCCCGCAACAGGGGGGTGGCCAAATATCATGAGAGGATGTTGCGGGAGTTCTCAAAACATAAAGATGATGATAGAAACAAACGATTGGAAGCCTTGAAAAACAATGATGTCGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATCCCGGGTGAAGCTGCAGAGAGATATGCTGTTCTGTCAACTTTCCTAACCCAGACTGAAGAGTATCTACATAAATTAGGAAGTAAGATAACGGCTGCCAAAAATCAACAGGAGGTGGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCGGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAACCGTTTTCTAGAGATGAATGCCCCTAGAGACAATTCATCTGTCAACAAGTATTACAACCTTGCTCATGCTGTGAATGAAGTGGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGTATAATTGGTTACCATCCGTGTCATGTATTTTTTATGTTGGAGGGAAGGATCATCGGTCAAAATTATTTTCTCAAGTTTCTGCTTTGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGATCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTTTTAGCACGGGATCTTGATAGATATCGTTGTCAAAGACGCTTGCTTTTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAGGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCTACCCAAAATGCAGATGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGTCTTCATCAGATTCTTGAGCCTTTTATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCGCTTCCACCAAAGGTCTCCATAGTTTTAAAATGTAAAATGTCAGCTGTCCAGGGTGCCATTTATGACTGGATCAAATCAACAGGCACCCTTCGTCTTGATCCGGAGGATGAGAAATGCAGGGTTCAAAAGAATCCAGTCTACCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAATGATTTATCTAAAGACTTCCTTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACCGGACATCGAGTTCTACTGTTCAGTACCATGACAAAGCTCCTAGACATCTTGGAAGAATACCTTCAGTGGCGAAGGCTTTTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTGGTTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGATCCAAACCCAAAAAATGAGGAGCAAGCAGTGGCCAGAGCTCATCGAATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCGGTTGTTGATAAAATCTCTAGTCATCAAAAGGAGGATGAAGTGAGAAGTGGAGGATCTGTGGATCTGGAGGATGAACTTGCAGGTAAGGATCGCTATATAGGATCCATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGAGATGGCGGATGAGGTTATTAATGCTGGACGCTTTGATCAAAGAACAACACATGAAGAGAGGCGTTTGACCTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCTTCACTGCAGGAAGTAAATCGTATGATTGCCAGGAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAACTGGATTGGATTGAGGAGATGACACGTTATGACCATGTGCCTAAGTGGCTTCGAGCCAATTCAAAAGAAGTGAATACTGCTATTGCTGCATTATCAAAAAAACCGTCAAAGAACACTTTATTGGGTGGTAGTATTGGCATGGAATCAAGTGAATTAGGTTCTGAAAGAAGAAGGGGACGACCCAAGGGGAAAAAACATCCTAATTATAAGGAGTTGGAAGATGAAAATTTGGAAAACTCTGAAGCAAGCTCTGACGAAAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTGTAGTGGGGCCGAAGGAGCTCAGCCCATTGATAAAGATCAATTGGATGATGGTCTGCTTTGTGATGCTGGATATGAATTTCCTCGATCTATAGAAAGTGCTAGAAATAATCAGATGGTTGAAGAAGCTGGTTCCTCTGGGTCTTCCTTAGACAGTCAAAGGTTGACACAGACAGTATCACCATCAGTTTCCTCTCAGAAATTCGGTTCCCTCTCTGCATTAGATGCCCGGCCAAGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCTTTATCTGGTGATTCTCACATGGATCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAGCAAGTTTTGCAGAAACCAAAGATTAAACGTAAACGTAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGGCCTGAAGAAAAGTCTGCCAGTGAAATGACATCTCATTTGGCAGTCCAAGCAGACCATAAACATCAAGCGCCACTGAGGACTGACCTAGAAACAAAACCATTTGGAGACTCCAACACCAGCAGGCATGATCAAAACACTTCATCATTAAAAAACAAGCGAACTTTGCCTTCAAGGAGAGTAGCTAATACATCCAAATCACACAGCTCACCGAAGTCTAGTCATTTGAATTGCATATCTGCTCCTTCAGAGGATGTTGGTGAACATTCCAGAGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGCTCTTCAGCTCATGGCACTAAGATGACTGAAATCATCCAGGTATGCTGCAAAAATGTAATTGGAAAACTCCAAAAGAGAATAGACAAGGAAGGCCTTCAAATTGTACCTTTGTTAATGGATTTGTGGAAGAGGATTGAGAATTCTGGGTACACTGGTGGATCCGGGAACAGCCTGTTGGATTTACGAATGATTGATCAACGGATTGATAGATTGGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGTTAAAGAGTGCAATGCAATTTTATGGTTTTTCTCATGAGGTAAGATCTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAAAAGCATTTCCTGATACGGACTTCCAAGATGTAAGAAGAGCACTTTCTTTCTCTGGTCAAAGCAAGAGACACAAGCTGATAAATAAGGTGGAAACTGATTCACACCCTTCACAGAGGCCACTGCAGCGTGGACCGGCTTCGAGTGGCGAAAACAACAGGATGAAAGCCCATGTGGCACAAAAGGAATCAAGAACTGGAAGTGGTTGTGGCAGCACTAGGGAGCTGCTTCATCAGGATGATTCTCCACTGCTCACACATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGAAAAATCATTGGTGAGGCCTAGGACTGGTCCTGTTTCACCTTCTAGCATGGTTCCTGTTATGAGAAGTCCAGGGCCATGTTCAGTCCCAAAGGATGCTAGATTAACTCAACAGAGTCCACATGGATCTGGTGGCTCAGTTGGCTGGGCCAACCATGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGCCATATATAG 6648 0.4331 MQSGGGGGGGPGRNPGVGPAGRAAASTSSAAASPSSSSSASQLGLDSLQQQQQQQHQIGSRQSFQQQLLRKPEGNEAFLAYQAGLQGVFGSNNFSSPGAMQLPQQSRKFIDIAHHGSNQDAQLRGQGIEQQMLNPVHQAYLQYALQAAQQKSALGIQSQQQTKMGMLNPSSLKDQEVRMGNLKIPDIMSMQGVNQAQGSSSRNSSEHVARGEKQLEQGQQIAPDQKSEGKPSTQGPAITHFIPGNMVRPMQAPETQQGIQNVVNAQIAVSAQLQAMQAWARERNIDLSHPANAHLMAQLIPLMPSRTVSQPKVNESNIGAQLSPVPVSKQQVTSPAVASESSAHANSPSDASGQSGSSKARQTVPHSHLGSTINAGIAGNSRDMAMQQFSVHGRESQAPMRQPVLVGTGMPSMHSQQSSANMNLGADNPLNAKTSSSGPEPPQMPYIRQLNQSAPQSGGPTNEGGSGNYAKSPGTPAQIPQQRNGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPAPLEMQAQHPNHLPGGQNQDKSAGNIVAEQPRHIESNAKESQSIPAINGQSSLKQESFARDEKSTTPPVHIQAIMPPMSKESAPTLSAGKEEHKSMGCSVKSNQDSERGNSSTPVRNELALDRGKGIASQASVSDTMHIKKPAQASTVSQPKDVESTRKYHGPLFDFPFFTRKHDSFGSSMILNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSVFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKHKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGEAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDNSSVNKYYNLAHAVNEVVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDHRSKLFSQVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPTQNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQGAIYDWIKSTGTLRLDPEDEKCRVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLLYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEVRSGGSVDLEDELAGKDRYIGSIESLIRNNIQQYKIEMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIEEMTRYDHVPKWLRANSKEVNTAIAALSKKPSKNTLLGGSIGMESSELGSERRRGRPKGKKHPNYKELEDENLENSEASSDERNGYAHEEGEIGEFEDDGCSGAEGAQPIDKDQLDDGLLCDAGYEFPRSIESARNNQMVEEAGSSGSSLDSQRLTQTVSPSVSSQKFGSLSALDARPSSISKRMTDELEEGEIALSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSASEMTSHLAVQADHKHQAPLRTDLETKPFGDSNTSRHDQNTSSLKNKRTLPSRRVANTSKSHSSPKSSHLNCISAPSEDVGEHSRESWEGKPINSSGSSAHGTKMTEIIQVCCKNVIGKLQKRIDKEGLQIVPLLMDLWKRIENSGYTGGSGNSLLDLRMIDQRIDRLEYNGATELVFDVQFMLKSAMQFYGFSHEVRSEARKVHDLFFDILKKAFPDTDFQDVRRALSFSGQSKRHKLINKVETDSHPSQRPLQRGPASSGENNRMKAHVAQKESRTGSGCGSTRELLHQDDSPLLTHPGELVVCKKRRNDREKSLVRPRTGPVSPSSMVPVMRSPGPCSVPKDARLTQQSPHGSGGSVGWANHVKRLRTDSGKRRPSHI 2215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 1780 1935 - -
Gabi4069g00018 2215 SMART helicmild6 1368 1452 IPR001650 -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 391 481 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 218 234 - -
Gabi4069g00018 2215 Pfam Helicase conserved C-terminal domain 1341 1452 IPR001650 -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 1791 1812 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 2137 2153 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 317 376 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 1617 1700 - -
Gabi4069g00018 2215 Coils Coil 762 786 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 620 637 - -
Gabi4069g00018 2215 FunFam ATP-dependent helicase BRM 1003 1250 - -
Gabi4069g00018 2215 SMART QLQ_2 484 521 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 558 576 - -
Gabi4069g00018 2215 CDD SF2_C_SNF 1337 1462 - -
Gabi4069g00018 2215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1342 1519 IPR001650 -
Gabi4069g00018 2215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1024 1188 IPR014001 -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 2072 2215 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 1 68 - -
Gabi4069g00018 2215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1241 IPR027417 -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 192 241 - -
Gabi4069g00018 2215 FunFam Brahma1 1938 2061 - -
Gabi4069g00018 2215 ProSiteProfiles QLQ domain profile. 485 521 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00018 2215 Gene3D - 1251 1461 IPR027417 -
Gabi4069g00018 2215 Gene3D - 1003 1250 IPR038718 -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 409 481 - -
Gabi4069g00018 2215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1245 1583 IPR027417 -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 1725 1760 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 1861 1908 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 2080 2096 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 1647 1676 - -
Gabi4069g00018 2215 FunFam ATP-dependent helicase BRM 1251 1461 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 558 637 - -
Gabi4069g00018 2215 Gene3D - 1937 2083 IPR036427 GO:0005515
Gabi4069g00018 2215 SMART ultradead3 1008 1196 IPR014001 -
Gabi4069g00018 2215 PANTHER SNF2/RAD54 HELICASE FAMILY 744 1768 - -
Gabi4069g00018 2215 Pfam QLQ 486 519 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00018 2215 Pfam SNF2-related domain 1015 1318 IPR000330 GO:0005524|GO:0140658
Gabi4069g00018 2215 Coils Coil 1558 1578 - -
Gabi4069g00018 2215 MobiDBLite consensus disorder prediction 26 68 - -
Gabi4069g00018 2215 SUPERFAMILY Bromodomain 1990 2051 IPR036427 GO:0005515
Gabi4069g00018 2215 SMART bromo_6 1940 2051 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00018 Gabi-Chr4069 283897 297058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00018 1033 1477 RAD5 or RAD16-like Gene Family AT1G02670 26.296 7.87e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4069g00018 SNF2_N 5.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00018 K11647 - gmx:100807104 3650.14