Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00017 ATGCAGTCTGGTGGCGGCGGTGGCGGTGGGCCAGGCCGGAACCCCGGAGTGGGGCCGGCTGGGCGGGCGGCGGCTTCGACGTCATCGGCGGCTGCGTCACCATCTTCTTCGTCTTCGGCATCGCAGTTGGGGTTGGACTCATTGCAGCAGCAGCAGCAGCAGCAGCATCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTACTTAGAAAACCTGAAGGGAATGAAGCTTTTTTAGCTTATCAAGCAGGACTTCAAGGGGTATTTGGGAGTAACAATTTTTCATCTCCTGGTGCCATGCAACTGCCCCAGCAGTCTCGAAAATTCATTGATATAGCTCATCATGGTTCCAACCAGGATGCTCAGTTAAGGGGTCAAGGTATTGAGCAGCAAATGCTAAATCCTGTCCATCAAGCATACCTTCAATATGCTCTACAGGCTGCACAACAAAAGTCTGCTTTGGGAATTCAGTCACAGCAGCAAACTAAAATGGGAATGTTAAACCCTTCTTCTCTGAAGGATCAGGAAGTGCGTATGGGAAATTTGAAGATACCGGACATTATGTCTATGCAGGGGGTGAATCAAGCTCAAGGATCATCCTCTAGGAATTCATCTGAACATGTTGCTCGTGGGGAAAAGCAGTTGGAGCAAGGACAGCAGATAGCACCCGATCAGAAGAGTGAAGGAAAGCCTTCAACCCAGGGACCAGCCATCACACACTTTATTCCTGGAAATATGGTAAGACCCATGCAAGCACCAGAAACTCAGCAGGGCATCCAAAATGTTGTGAATGCGCAGATTGCAGTATCTGCTCAATTGCAGGCTATGCAGGCATGGGCACGTGAACGTAATATTGATTTATCACATCCTGCAAATGCACACTTAATGGCTCAGCTCATTCCACTGATGCCGTCAAGGACGGTCTCACAACCAAAGGTCAATGAAAGCAACATTGGTGCTCAGTTATCTCCTGTCCCTGTTTCAAAGCAGCAGGTAACTTCTCCAGCTGTTGCAAGTGAGAGCTCAGCACATGCTAATTCACCAAGTGATGCATCTGGGCAGTCAGGTTCTTCAAAAGCCAGGCAGACAGTTCCACACAGTCATCTTGGTTCAACAATAAATGCTGGTATAGCTGGTAACTCCAGGGACATGGCAATGCAGCAATTCAGTGTTCATGGCAGAGAGTCTCAAGCTCCTATGAGGCAACCAGTATTAGTTGGAACTGGAATGCCCTCTATGCATTCTCAGCAGTCTTCTGCCAACATGAACTTAGGTGCAGACAATCCTTTGAATGCAAAAACTTCATCATCTGGTCCGGAGCCTCCTCAAATGCCGTACATCAGGCAGTTAAACCAATCTGCTCCTCAGTCTGGAGGTCCAACAAACGAAGGGGGTTCAGGAAATTATGCTAAATCTCCAGGGACACCAGCTCAAATACCTCAGCAACGAAATGGATTTACCAAACAACAGCTACATGTTCTTAAAGCGCAGATACTAGCATTTAGGCGGCTGAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCGGGCTATTGTTCCAGCACCTCTTGAGATGCAGGCGCAACACCCAAATCATCTTCCAGGAGGACAAAATCAAGACAAATCTGCTGGAAATATTGTGGCAGAACAACCAAGGCACATTGAGTCCAATGCAAAGGAGTCACAATCTATCCCTGCTATTAATGGACAGAGTTCTTTAAAGCAGGAATCCTTTGCCCGAGATGAGAAATCTACCACACCACCAGTTCATATTCAAGCTATTATGCCACCTATGTCAAAAGAATCTGCTCCAACGTTATCTGCTGGAAAGGAAGAGCATAAATCAATGGGATGCTCTGTTAAGTCAAACCAGGACAGTGAACGTGGGAACAGCAGTACTCCAGTTAGAAACGAGTTAGCATTAGATAGAGGAAAGGGTATTGCATCACAGGCTTCTGTATCTGACACAATGCACATTAAGAAACCTGCACAAGCAAGTACTGTTTCCCAGCCAAAGGATGTAGAATCCACCAGAAAATATCATGGACCCTTATTTGATTTTCCTTTCTTCACTAGGAAACATGACTCCTTTGGGTCATCAATGATTTTAAACAACAACAATAATTTGTCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGAATGGAAGTACTTAATAAGAAACGGACAGAAAATTTAAAGAAGATTGAAGGTTTATTGGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTGAGGCTGCAAATTGAAGAGAAAAAACTTCGCCTTTTAGATCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAGCGTCAACGTATGGAACTTGCTAGACAAGTACAGGCATCACAGAGAGCTGTAAGGGAGAAGCAACTCAAATCAGTATTTCAGTGGCGTAAAAAGCTTCTTGAGGCACACTGGGCTATTCGTGATGCGCGTACTGCCCGCAACAGGGGGGTGGCCAAATATCATGAGAGGATGTTGCGGGAGTTCTCAAAACATAAAGATGATGATAGAAACAAACGATTGGAAGCCTTGAAAAACAATGATGTCGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATCCCGGGTGAAGCTGCAGAGAGATATGCTGTTCTGTCAACTTTCCTAACCCAGACTGAAGAGTATCTACATAAATTAGGAAGTAAGATAACGGCTGCCAAAAATCAACAGGAGGTGGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCGGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAACCGTTTTCTAGAGATGAATGCCCCTAGAGACAATTCATCTGTCAACAAGTATTACAACCTTGCTCATGCTGTGAATGAAGTGGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGTATAATTGGTTACCATCCGTGTCATGTATTTTTTATGTTGGAGGGAAGGATCATCGGTCAAAATTATTTTCTCAAGAGGTTTCTGCTTTGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGATCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTTTTAGCACGGGATCTTGATAGATATCGTTGTCAAAGACGCTTGCTTTTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAGGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCTACCCAAAATGCAGATGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGTCTTCATCAGATTCTTGAGCCTTTTATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCGCTTCCACCAAAGGTCTCCATAGTTTTAAAATGTAAAATGTCAGCTGTCCAGGGTGCCATTTATGACTGGATCAAATCAACAGGCACCCTTCGTCTTGATCCGGAGGATGAGAAATGCAGGGTTCAAAAGAATCCAGTCTACCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAATGATTTATCTAAAGACTTCCTTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACCGGACATCGAGTTCTACTGTTCAGTACCATGACAAAGCTCCTAGACATCTTGGAAGAATACCTTCAGTGGCGAAGGCTTTTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTGGTTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGATCCAAACCCAAAAAATGAGGAGCAAGCAGTGGCCAGAGCTCATCGAATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCGGTTGTTGATAAAATCTCTAGTCATCAAAAGGAGGATGAAGTGAGAAGTGGAGGATCTGTGGATCTGGAGGATGAACTTGCAGGTAAGGATCGCTATATAGGATCCATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGAGATGGCGGATGAGGTTATTAATGCTGGACGCTTTGATCAAAGAACAACACATGAAGAGAGGCGTTTGACCTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCTTCACTGCAGGAAGTAAATCGTATGATTGCCAGGAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAACTGGATTGGATTGAGGAGATGACACGTTATGACCATGTGCCTAAGTGGCTTCGAGCCAATTCAAAAGAAGTGAATACTGCTATTGCTGCATTATCAAAAAAACCGTCAAAGAACACTTTATTGGGTGGTAGTATTGGCATGGAATCAAGTGAATTAGGTTCTGAAAGAAGAAGGGGACGACCCAAGGGGAAAAAACATCCTAATTATAAGGAGTTGGAAGATGAAAATTTGGAAAACTCTGAAGCAAGCTCTGACGAAAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTGTAGTGGGGCCGAAGGAGCTCAGCCCATTGATAAAGATCAATTGGATGATGGTCTGCTTTGTGATGCTGGATATGAATTTCCTCGATCTATAGAAAGTGCTAGAAATAATCAGATGGTTGAAGAAGCTGGTTCCTCTGGGTCTTCCTTAGACAGTCAAAGGTTGACACAGACAGTATCACCATCAGTTTCCTCTCAGAAATTCGGTTCCCTCTCTGCATTAGATGCCCGGCCAAGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCTTTATCTGGTGATTCTCACATGGATCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAGCAAGTTTTGCAGAAACCAAAGATTAAACGTAAACGTAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGGCCTGAAGAAAAGTCTGCCAGTGAAATGACATCTCATTTGGCAGTCCAAGCAGACCATAAACATCAAGCGCCACTGAGGACTGACCTAGAAACAAAACCATTTGGAGACTCCAACACCAGCAGGCATGATCAAAACACTTCATCATTAAAAAACAAGCGAACTTTGCCTTCAAGGAGAGTAGCTAATACATCCAAATCACACAGCTCACCGAAGTCTAGTCATTTGAATTGCATATCTGCTCCTTCAGAGGATGTTGGTGAACATTCCAGAGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGCTCTTCAGCTCATGGCACTAAGATGACTGAAATCATCCAGTGCAAAAATGTAATTGGAAAACTCCAAAAGAGAATAGACAAGGAAGGCCTTCAAATTGTACCTTTGTTAATGGATTTGTGGAAGAGGATTGAGAATTCTGGGTACACTGGTGGATCCGGGAACAGCCTGTTGGATTTACGAATGATTGATCAACGGATTGATAGATTGGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGTTAAAGAGTGCAATGCAATTTTATGGTTTTTCTCATGAGGTAAGATCTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAAAAGCATTTCCTGATACGGACTTCCAAGATGTAAGAAGAGCACTTTCTTTCTCTGGTCAAAGCAAGAGACACAAGCTGATAAATAAGGTGGAAACTGATTCACACCCTTCACAGAGGCCACTGCAGCGTGGACCGGCTTCGAGTGGCGAAAACAACAGGATGAAAGCCCATGTGGCACAAAAGGAATCAAGAACTGGAAGTGGTTGTGGCAGCACTAGGGAGCTGCTTCATCAGGATGATTCTCCACTGCTCACACATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGAAAAATCATTGGTGAGGCCTAGGACTGGTCCTGTTTCACCTTCTAGCATGGTTCCTGTTATGAGAAGTCCAGGGCCATGTTCAGTCCCAAAGGATGCTAGATTAACTCAACAGAGTCCACATGGATCTGGTGGCTCAGTTGGCTGGGCCAACCATGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGCCATATATAG 6645 0.4331 MQSGGGGGGGPGRNPGVGPAGRAAASTSSAAASPSSSSSASQLGLDSLQQQQQQQHQIGSRQSFQQQLLRKPEGNEAFLAYQAGLQGVFGSNNFSSPGAMQLPQQSRKFIDIAHHGSNQDAQLRGQGIEQQMLNPVHQAYLQYALQAAQQKSALGIQSQQQTKMGMLNPSSLKDQEVRMGNLKIPDIMSMQGVNQAQGSSSRNSSEHVARGEKQLEQGQQIAPDQKSEGKPSTQGPAITHFIPGNMVRPMQAPETQQGIQNVVNAQIAVSAQLQAMQAWARERNIDLSHPANAHLMAQLIPLMPSRTVSQPKVNESNIGAQLSPVPVSKQQVTSPAVASESSAHANSPSDASGQSGSSKARQTVPHSHLGSTINAGIAGNSRDMAMQQFSVHGRESQAPMRQPVLVGTGMPSMHSQQSSANMNLGADNPLNAKTSSSGPEPPQMPYIRQLNQSAPQSGGPTNEGGSGNYAKSPGTPAQIPQQRNGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPAPLEMQAQHPNHLPGGQNQDKSAGNIVAEQPRHIESNAKESQSIPAINGQSSLKQESFARDEKSTTPPVHIQAIMPPMSKESAPTLSAGKEEHKSMGCSVKSNQDSERGNSSTPVRNELALDRGKGIASQASVSDTMHIKKPAQASTVSQPKDVESTRKYHGPLFDFPFFTRKHDSFGSSMILNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSVFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKHKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGEAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDNSSVNKYYNLAHAVNEVVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDHRSKLFSQEVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPTQNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQGAIYDWIKSTGTLRLDPEDEKCRVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLLYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEVRSGGSVDLEDELAGKDRYIGSIESLIRNNIQQYKIEMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIEEMTRYDHVPKWLRANSKEVNTAIAALSKKPSKNTLLGGSIGMESSELGSERRRGRPKGKKHPNYKELEDENLENSEASSDERNGYAHEEGEIGEFEDDGCSGAEGAQPIDKDQLDDGLLCDAGYEFPRSIESARNNQMVEEAGSSGSSLDSQRLTQTVSPSVSSQKFGSLSALDARPSSISKRMTDELEEGEIALSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSASEMTSHLAVQADHKHQAPLRTDLETKPFGDSNTSRHDQNTSSLKNKRTLPSRRVANTSKSHSSPKSSHLNCISAPSEDVGEHSRESWEGKPINSSGSSAHGTKMTEIIQCKNVIGKLQKRIDKEGLQIVPLLMDLWKRIENSGYTGGSGNSLLDLRMIDQRIDRLEYNGATELVFDVQFMLKSAMQFYGFSHEVRSEARKVHDLFFDILKKAFPDTDFQDVRRALSFSGQSKRHKLINKVETDSHPSQRPLQRGPASSGENNRMKAHVAQKESRTGSGCGSTRELLHQDDSPLLTHPGELVVCKKRRNDREKSLVRPRTGPVSPSSMVPVMRSPGPCSVPKDARLTQQSPHGSGGSVGWANHVKRLRTDSGKRRPSHI 2214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 391 481 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 218 234 - -
Gabi4069g00017 2214 Pfam Helicase conserved C-terminal domain 1342 1453 IPR001650 -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 317 376 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 1862 1909 - -
Gabi4069g00017 2214 Coils Coil 762 786 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 2079 2095 - -
Gabi4069g00017 2214 FunFam Brahma1 1939 2060 - -
Gabi4069g00017 2214 FunFam ATP-dependent helicase BRM 1252 1462 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 620 637 - -
Gabi4069g00017 2214 SMART QLQ_2 484 521 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 558 576 - -
Gabi4069g00017 2214 Coils Coil 1559 1579 - -
Gabi4069g00017 2214 Gene3D - 1003 1251 IPR038718 -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 1 68 - -
Gabi4069g00017 2214 PANTHER SNF2/RAD54 HELICASE FAMILY 746 1765 - -
Gabi4069g00017 2214 Pfam SNF2-related domain 1015 1319 IPR000330 GO:0005524|GO:0140658
Gabi4069g00017 2214 SMART bromo_6 1939 2050 IPR001487 GO:0005515
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 192 241 - -
Gabi4069g00017 2214 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1343 1520 IPR001650 -
Gabi4069g00017 2214 ProSiteProfiles QLQ domain profile. 485 521 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 409 481 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 1648 1677 - -
Gabi4069g00017 2214 Pfam QLQ 486 519 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00017 2214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1584 IPR027417 -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 2136 2152 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 1618 1701 - -
Gabi4069g00017 2214 SUPERFAMILY Bromodomain 1990 2050 IPR036427 GO:0005515
Gabi4069g00017 2214 SMART helicmild6 1369 1453 IPR001650 -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 558 637 - -
Gabi4069g00017 2214 CDD SF2_C_SNF 1338 1463 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 1781 1936 - -
Gabi4069g00017 2214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1242 IPR027417 -
Gabi4069g00017 2214 SMART ultradead3 1008 1197 IPR014001 -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 1792 1813 - -
Gabi4069g00017 2214 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1024 1189 IPR014001 -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 1726 1761 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 2071 2214 - -
Gabi4069g00017 2214 MobiDBLite consensus disorder prediction 26 68 - -
Gabi4069g00017 2214 Gene3D - 1252 1462 IPR027417 -
Gabi4069g00017 2214 Gene3D - 1942 2082 IPR036427 GO:0005515
Gabi4069g00017 2214 FunFam ATP-dependent helicase BRM 1003 1251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00017 Gabi-Chr4069 283897 297058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00017 1033 1478 RAD5 or RAD16-like Gene Family AT1G02670 26.499 6.95e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4069g00017 SNF2_N 2.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00017 K11647 - gmx:100807104 3653.99