Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00016 ATGCAGTCTGGTGGCGGCGGTGGCGGTGGGCCAGGCCGGAACCCCGGAGTGGGGCCGGCTGGGCGGGCGGCGGCTTCGACGTCATCGGCGGCTGCGTCACCATCTTCTTCGTCTTCGGCATCGCAGTTGGGGTTGGACTCATTGCAGCAGCAGCAGCAGCAGCAGCATCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTACTTAGAAAACCTGAAGGGAATGAAGCTTTTTTAGCTTATCAAGCAGGACTTCAAGGGGTATTTGGGAGTAACAATTTTTCATCTCCTGGTGCCATGCAACTGCCCCAGCAGTCTCGAAAATTCATTGATATAGCTCATCATGGTTCCAACCAGGATGCTCAGTTAAGGGGTCAAGGTATTGAGCAGCAAATGCTAAATCCTGTCCATCAAGCATACCTTCAATATGCTCTACAGGCTGCACAACAAAAGTCTGCTTTGGGAATTCAGTCACAGCAGCAAACTAAAATGGGAATGTTAAACCCTTCTTCTCTGAAGGATCAGGAAGTGCGTATGGGAAATTTGAAGATACCGGACATTATGTCTATGCAGGGGGTGAATCAAGCTCAAGGATCATCCTCTAGGAATTCATCTGAACATGTTGCTCGTGGGGAAAAGCAGTTGGAGCAAGGACAGCAGATAGCACCCGATCAGAAGAGTGAAGGAAAGCCTTCAACCCAGGGACCAGCCATCACACACTTTATTCCTGGAAATATGGTAAGACCCATGCAAGCACCAGAAACTCAGCAGGGCATCCAAAATGTTGTGAATGCGCAGATTGCAGTATCTGCTCAATTGCAGGCTATGCAGGCATGGGCACGTGAACGTAATATTGATTTATCACATCCTGCAAATGCACACTTAATGGCTCAGCTCATTCCACTGATGCCGTCAAGGACGGTCTCACAACCAAAGGTCAATGAAAGCAACATTGGTGCTCAGTTATCTCCTGTCCCTGTTTCAAAGCAGCAGGTAACTTCTCCAGCTGTTGCAAGTGAGAGCTCAGCACATGCTAATTCACCAAGTGATGCATCTGGGCAGTCAGGTTCTTCAAAAGCCAGGCAGACAGTTCCACACAGTCATCTTGGTTCAACAATAAATGCTGGTATAGCTGGTAACTCCAGGGACATGGCAATGCAGCAATTCAGTGTTCATGGCAGAGAGTCTCAAGCTCCTATGAGGCAACCAGTATTAGTTGGAACTGGAATGCCCTCTATGCATTCTCAGCAGTCTTCTGCCAACATGAACTTAGGTGCAGACAATCCTTTGAATGCAAAAACTTCATCATCTGGTCCGGAGCCTCCTCAAATGCCGTACATCAGGCAGTTAAACCAATCTGCTCCTCAGTCTGGAGGTCCAACAAACGAAGGGGGTTCAGGAAATTATGCTAAATCTCCAGGGACACCAGCTCAAATACCTCAGCAACGAAATGGATTTACCAAACAACAGCTACATGTTCTTAAAGCGCAGATACTAGCATTTAGGCGGCTGAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCGGGCTATTGTTCCAGCACCTCTTGAGATGCAGGCGCAACACCCAAATCATCTTCCAGGAGGACAAAATCAAGACAAATCTGCTGGAAATATTGTGGCAGAACAACCAAGGCACATTGAGTCCAATGCAAAGGAGTCACAATCTATCCCTGCTATTAATGGACAGAGTTCTTTAAAGCAGGAATCCTTTGCCCGAGATGAGAAATCTACCACACCACCAGTTCATATTCAAGCTATTATGCCACCTATGTCAAAAGAATCTGCTCCAACGTTATCTGCTGGAAAGGAAGAGCATAAATCAATGGGATGCTCTGTTAAGTCAAACCAGGACAGTGAACGTGGGAACAGCAGTACTCCAGTTAGAAACGAGTTAGCATTAGATAGAGGAAAGGGTATTGCATCACAGGCTTCTGTATCTGACACAATGCACATTAAGAAACCTGCACAAGCAAGTACTGTTTCCCAGCCAAAGGATGTAGAATCCACCAGAAAATATCATGGACCCTTATTTGATTTTCCTTTCTTCACTAGGAAACATGACTCCTTTGGGTCATCAATGATTTTAAACAACAACAATAATTTGTCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGAATGGAAGTACTTAATAAGAAACGGACAGAAAATTTAAAGAAGATTGAAGGTTTATTGGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTGAGGCTGCAAATTGAAGAGAAAAAACTTCGCCTTTTAGATCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAGCGTCAACGTATGGAACTTGCTAGACAAGTACAGGCATCACAGAGAGCTGTAAGGGAGAAGCAACTCAAATCAGTATTTCAGTGGCGTAAAAAGCTTCTTGAGGCACACTGGGCTATTCGTGATGCGCGTACTGCCCGCAACAGGGGGGTGGCCAAATATCATGAGAGGATGTTGCGGGAGTTCTCAAAACATAAAGATGATGATAGAAACAAACGATTGGAAGCCTTGAAAAACAATGATGTCGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATCCCGGGTGAAGCTGCAGAGAGATATGCTGTTCTGTCAACTTTCCTAACCCAGACTGAAGAGTATCTACATAAATTAGGAAGTAAGATAACGGCTGCCAAAAATCAACAGGAGGTGGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCGGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAACCGTTTTCTAGAGATGAATGCCCCTAGAGACAATTCATCTGTCAACAAGTATTACAACCTTGCTCATGCTGTGAATGAAGTGGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGTATAATTGGTTACCATCCGTGTCATGTATTTTTTATGTTGGAGGGAAGGATCATCGGTCAAAATTATTTTCTCAAGAGGTTTCTGCTTTGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGATCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTTTTAGCACGGGATCTTGATAGATATCGTTGTCAAAGACGCTTGCTTTTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAGGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCTACCCAAAATGCAGATGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGTCTTCATCAGATTCTTGAGCCTTTTATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCGCTTCCACCAAAGGTCTCCATAGTTTTAAAATGTAAAATGTCAGCTGTCCAGGGTGCCATTTATGACTGGATCAAATCAACAGGCACCCTTCGTCTTGATCCGGAGGATGAGAAATGCAGGGTTCAAAAGAATCCAGTCTACCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAATGATTTATCTAAAGACTTCCTTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACCGGACATCGAGTTCTACTGTTCAGTACCATGACAAAGCTCCTAGACATCTTGGAAGAATACCTTCAGTGGCGAAGGCTTTTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTGGTTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGATCCAAACCCAAAAAATGAGGAGCAAGCAGTGGCCAGAGCTCATCGAATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCGGTTGTTGATAAAATCTCTAGTCATCAAAAGGAGGATGAAGTGAGAAGTGGAGGATCTGTGGATCTGGAGGATGAACTTGCAGGTAAGGATCGCTATATAGGATCCATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGAGATGGCGGATGAGGTTATTAATGCTGGACGCTTTGATCAAAGAACAACACATGAAGAGAGGCGTTTGACCTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCTTCACTGCAGGAAGTAAATCGTATGATTGCCAGGAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAACTGGATTGGATTGAGGAGATGACACGTTATGACCATGTGCCTAAGTGGCTTCGAGCCAATTCAAAAGAAGTGAATACTGCTATTGCTGCATTATCAAAAAAACCGTCAAAGAACACTTTATTGGGTGGTAGTATTGGCATGGAATCAAGTGAATTAGGTTCTGAAAGAAGAAGGGGACGACCCAAGGGGAAAAAACATCCTAATTATAAGGAGTTGGAAGATGAAAATTTGGAAAACTCTGAAGCAAGCTCTGACGAAAGAAATGGATATGCACATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTGTAGTGGGGCCGAAGGAGCTCAGCCCATTGATAAAGATCAATTGGATGATGGTCTGCTTTGTGATGCTGGATATGAATTTCCTCGATCTATAGAAAGTGCTAGAAATAATCAGATGGTTGAAGAAGCTGGTTCCTCTGGGTCTTCCTTAGACAGTCAAAGGTTGACACAGACAGTATCACCATCAGTTTCCTCTCAGAAATTCGGTTCCCTCTCTGCATTAGATGCCCGGCCAAGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCTTTATCTGGTGATTCTCACATGGATCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAGCAAGTTTTGCAGAAACCAAAGATTAAACGTAAACGTAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGGCCTGAAGAAAAGTCTGCCAGTGAAATGACATCTCATTTGGCAGTCCAAGCAGACCATAAACATCAAGCGCCACTGAGGACTGACCTAGAAACAAAACCATTTGGAGACTCCAACACCAGCAGGCATGATCAAAACACTTCATCATTAAAAAACAAGCGAACTTTGCCTTCAAGGAGAGTAGCTAATACATCCAAATCACACAGCTCACCGAAGTCTAGTCATTTGAATTGCATATCTGCTCCTTCAGAGGATGTTGGTGAACATTCCAGAGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGCTCTTCAGCTCATGGCACTAAGATGACTGAAATCATCCAGGTATGCTGCAAAAATGTAATTGGAAAACTCCAAAAGAGAATAGACAAGGAAGGCCTTCAAATTGTACCTTTGTTAATGGATTTGTGGAAGAGGATTGAGAATTCTGGGTACACTGGTGGATCCGGGAACAGCCTGTTGGATTTACGAATGATTGATCAACGGATTGATAGATTGGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGTTAAAGAGTGCAATGCAATTTTATGGTTTTTCTCATGAGGTAAGATCTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAAAAGCATTTCCTGATACGGACTTCCAAGATGTAAGAAGAGCACTTTCTTTCTCTGGTCAAAGCAAGAGACACAAGCTGATAAATAAGGTGGAAACTGATTCACACCCTTCACAGAGGCCACTGCAGCGTGGACCGGCTTCGAGTGGCGAAAACAACAGGATGAAAGCCCATGTGGCACAAAAGGAATCAAGAACTGGAAGTGGTTGTGGCAGCACTAGGGAGCTGCTTCATCAGGATGATTCTCCACTGCTCACACATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGAAAAATCATTGGTGAGGCCTAGGACTGGTCCTGTTTCACCTTCTAGCATGGTTCCTGTTATGAGAAGTCCAGGGCCATGTTCAGTCCCAAAGGATGCTAGATTAACTCAACAGAGTCCACATGGATCTGGTGGCTCAGTTGGCTGGGCCAACCATGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGCCATATATAG 6651 0.4332 MQSGGGGGGGPGRNPGVGPAGRAAASTSSAAASPSSSSSASQLGLDSLQQQQQQQHQIGSRQSFQQQLLRKPEGNEAFLAYQAGLQGVFGSNNFSSPGAMQLPQQSRKFIDIAHHGSNQDAQLRGQGIEQQMLNPVHQAYLQYALQAAQQKSALGIQSQQQTKMGMLNPSSLKDQEVRMGNLKIPDIMSMQGVNQAQGSSSRNSSEHVARGEKQLEQGQQIAPDQKSEGKPSTQGPAITHFIPGNMVRPMQAPETQQGIQNVVNAQIAVSAQLQAMQAWARERNIDLSHPANAHLMAQLIPLMPSRTVSQPKVNESNIGAQLSPVPVSKQQVTSPAVASESSAHANSPSDASGQSGSSKARQTVPHSHLGSTINAGIAGNSRDMAMQQFSVHGRESQAPMRQPVLVGTGMPSMHSQQSSANMNLGADNPLNAKTSSSGPEPPQMPYIRQLNQSAPQSGGPTNEGGSGNYAKSPGTPAQIPQQRNGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPAPLEMQAQHPNHLPGGQNQDKSAGNIVAEQPRHIESNAKESQSIPAINGQSSLKQESFARDEKSTTPPVHIQAIMPPMSKESAPTLSAGKEEHKSMGCSVKSNQDSERGNSSTPVRNELALDRGKGIASQASVSDTMHIKKPAQASTVSQPKDVESTRKYHGPLFDFPFFTRKHDSFGSSMILNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSVFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKHKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGEAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDNSSVNKYYNLAHAVNEVVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDHRSKLFSQEVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPTQNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQGAIYDWIKSTGTLRLDPEDEKCRVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLLYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEVRSGGSVDLEDELAGKDRYIGSIESLIRNNIQQYKIEMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIEEMTRYDHVPKWLRANSKEVNTAIAALSKKPSKNTLLGGSIGMESSELGSERRRGRPKGKKHPNYKELEDENLENSEASSDERNGYAHEEGEIGEFEDDGCSGAEGAQPIDKDQLDDGLLCDAGYEFPRSIESARNNQMVEEAGSSGSSLDSQRLTQTVSPSVSSQKFGSLSALDARPSSISKRMTDELEEGEIALSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSASEMTSHLAVQADHKHQAPLRTDLETKPFGDSNTSRHDQNTSSLKNKRTLPSRRVANTSKSHSSPKSSHLNCISAPSEDVGEHSRESWEGKPINSSGSSAHGTKMTEIIQVCCKNVIGKLQKRIDKEGLQIVPLLMDLWKRIENSGYTGGSGNSLLDLRMIDQRIDRLEYNGATELVFDVQFMLKSAMQFYGFSHEVRSEARKVHDLFFDILKKAFPDTDFQDVRRALSFSGQSKRHKLINKVETDSHPSQRPLQRGPASSGENNRMKAHVAQKESRTGSGCGSTRELLHQDDSPLLTHPGELVVCKKRRNDREKSLVRPRTGPVSPSSMVPVMRSPGPCSVPKDARLTQQSPHGSGGSVGWANHVKRLRTDSGKRRPSHI 2216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 391 481 - -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 218 234 - -
Gabi4069g00016 2216 Pfam Helicase conserved C-terminal domain 1342 1453 IPR001650 -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 317 376 - -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 1862 1909 - -
Gabi4069g00016 2216 Coils Coil 762 786 - -
Gabi4069g00016 2216 FunFam ATP-dependent helicase BRM 1252 1462 - -
Gabi4069g00016 2216 FunFam Brahma1 1939 2062 - -
Gabi4069g00016 2216 SMART bromo_6 1941 2052 IPR001487 GO:0005515
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 620 637 - -
Gabi4069g00016 2216 SMART QLQ_2 484 521 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 558 576 - -
Gabi4069g00016 2216 Coils Coil 1559 1579 - -
Gabi4069g00016 2216 Gene3D - 1003 1251 IPR038718 -
Gabi4069g00016 2216 Gene3D - 1938 2084 IPR036427 GO:0005515
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 1 68 - -
Gabi4069g00016 2216 Pfam SNF2-related domain 1015 1319 IPR000330 GO:0005524|GO:0140658
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 192 241 - -
Gabi4069g00016 2216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1343 1520 IPR001650 -
Gabi4069g00016 2216 ProSiteProfiles QLQ domain profile. 485 521 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 409 481 - -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 1648 1677 - -
Gabi4069g00016 2216 Pfam QLQ 486 519 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi4069g00016 2216 PANTHER SNF2/RAD54 HELICASE FAMILY 731 1769 - -
Gabi4069g00016 2216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1584 IPR027417 -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 1618 1701 - -
Gabi4069g00016 2216 SMART helicmild6 1369 1453 IPR001650 -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 558 637 - -
Gabi4069g00016 2216 CDD SF2_C_SNF 1338 1463 - -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 1781 1936 - -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 2073 2216 - -
Gabi4069g00016 2216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1242 IPR027417 -
Gabi4069g00016 2216 SMART ultradead3 1008 1197 IPR014001 -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 1792 1813 - -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 2138 2154 - -
Gabi4069g00016 2216 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1024 1189 IPR014001 -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 1726 1761 - -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 26 68 - -
Gabi4069g00016 2216 Gene3D - 1252 1462 IPR027417 -
Gabi4069g00016 2216 MobiDBLite consensus disorder prediction 2081 2097 - -
Gabi4069g00016 2216 SUPERFAMILY Bromodomain 1991 2052 IPR036427 GO:0005515
Gabi4069g00016 2216 FunFam ATP-dependent helicase BRM 1003 1251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00016 Gabi-Chr4069 283897 297058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00016 1033 1478 RAD5 or RAD16-like Gene Family AT1G02670 26.499 6.78e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4069g00016 SNF2_N 2.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00016 K11647 - gmx:100807104 3656.69