Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00009 ATGACCACAGTGAGAGAAATTGTAGAGGAGCCCAATCCAATTGTGGTTAATGACATAATATATGTTGCTGTTGCAAAATATTTGAAAGATAGCAAATCAGCTCTGATATGGGCTATACAGAACTCTGGAGGAAAGAAGATTTGCGTTCTTCATGTTCATGTGCCAGCACCTATGATCCCCTTGCTGGGTGCTAAATTTCCAGTAAGTGCACAGAAAGAGCAGGAAGTTCTAGCATACAGGGAAGTTGAAAGACAAGACATGCACAAGACTCTGGATGACTATGTTCTTACCTGTCAAAAAATGGGGGTGGTGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTCTAGAACTCATCTCCCAATATAACATACAGAATCTTGTAATGGGAGCAGCCACTGATAGGTACTATTCTAGGAGAATGACAGACATCAGATCTAAGAAAGCCATCTATGTATGTAAACAAGCTCCACCTTCTTGTAATATACAATATATCTGCAAAGGGAACCTTATACACACAAGGGATTGCATTTTGTATAGAGGTAATGTTGAGGTCATGTCTACTTTGGTGCATCAAATGCCAAATTCGGTATCCCAAACTAGTCAGGGTCGGCAATCTCAATCTATTACATTTGGGCAAAATCATTGGGTGAAACTAACTAGTCCAGCTCAAATGTTAATAAGTAGAGTAAGGTCTATCAATGATAGATATGGAAGGAGCATTGCAGCTGTTTCTCCGGAAGGGTTTGCAACTCTAGAGAACAGGTTGAGTAGAGAAGTATGTTCTGATGAGTCAGATGGGTTATCAAGATGGAGTTCTTCAGTTTTCTCAGTGTGCTCTGATAGTGCTTCAGTTGAATCAGCATTGACCACATATTTGATTAGTGAAGGCAGTGAGAATGTGTTAGACTTGAGTTTGAGTGGCCTTTCTCTGATTAAAGAGGATCTTCATCACTCATCACCTCCTAGTGTATTGGATGGGGGAATGGATGATACTCTCTATGATCAACTTGAACAAGCTATGGCTGAGGCTGAGAATGCTAGGCGGGACGCATATCAAGAAACTGTTACGAGTGGGATAGCTCAAAAAAATGCCATTGATGCTATACGCAGGGCTAAAGCCAGTGAAGTCTTGTATAAAGAAGAGCTGAGACTAAGGAAAGAGTTGGAGGAAGAATTAGAGAAAGCAAAAGAACAACTTGATAATATGAGGAGCATAAGAGACAAAGTTAATGAGGAACTCCGACTTGCACTGGATCAGAAGTCATCACTGGAAAATCAAATTGAATCAACTGAACTTATGATAAAGGAGTTGGAGGAGAAAATGACATCTGATGCAGATCTATTACAAAACTACAAGAATGAACTAGATGATTTGAAAATGCAGCGAGATAATGCTTTGAGAGAGGCTGAGGAGTTAAAGAGTAAACAAGGAGAGGCCTCAAGCACACATTTTCTTCAACTCTTCTCAGAATTCTCTTTTCCAGAGATCAAAGAAGCAACAAGTAACTTCGATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCCTGTGTCGCACGGAGGTGGCTATAAAAACGTTGGACCCCAAGAGCAAGCAAGGACCCTCGGAGTTTCAACAGGAGGTTAAGATATTGAGCAAGTTAAGGCATCCCAATATTATCACACTTATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTACGAGTATCTACCCAATGGAAACCTTGAAGATCGTCTCAGCTGCAAGGATAATACACCTCCATTATCATGGCAAACTCGTATTCGCATTGCTGCAGAACTATGTTCTGCTCTCATTTTTCTCCATGCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATCCTCCTTGATGCAAACCTTGTTAGTAAGCTTAGCGATTTTGGAATCTGTCGTGTATTATCTTGTCAAGAGAGTGCTGCTAACAATACTACACAGTTTTGGATAACTGATCCAAAGGGATCTTTTGTCTACATGGATCCTGAATTCCTTTCTACATGTGAACTTACTCCAAAGTCAGATGTTTACTCTTTTGGAATCATACTATTAGAATTGTTGACTGGGAAACCAGGCTTGGGATTAAAAAAGGAAGTGCAGTGTGCATTCGATGCCGGAAAGTTGAAATCTCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTGAGCAAGCTGAGAAGTTGACTCGCTTGGCTTTGAGGTGTTGTGAGATTGATAGAAAGAGCAGGCCAGAACTTCATTCAGATGTTTGGAGGATACTTGAACCAATAAGGGCTTCTTCTGGAGGCACAAACACCTTTGGACTAGGTTCTCAAGGGGTCTGCCAAATTCCTCCATATTTTATTTGTCCAATCTTACAGGAAGTCATGAGAGATCCACATGTGGCTGCAGATGGTTTTTCTTATGAAGCTGAGGCTATACAAGAATGGCTAAACAATGGTAATGACACTTCACCAAGGACAAATTCTAAGCTTGCACATCACAATCTTGTTCCCAACCATGCTATTCGCATTGCAATCCAGGATTGGCTTCAAAGTCACTGA 2601 0.4102 MTTVREIVEEPNPIVVNDIIYVAVAKYLKDSKSALIWAIQNSGGKKICVLHVHVPAPMIPLLGAKFPVSAQKEQEVLAYREVERQDMHKTLDDYVLTCQKMGVVAEKLHIEMDCIEKGILELISQYNIQNLVMGAATDRYYSRRMTDIRSKKAIYVCKQAPPSCNIQYICKGNLIHTRDCILYRGNVEVMSTLVHQMPNSVSQTSQGRQSQSITFGQNHWVKLTSPAQMLISRVRSINDRYGRSIAAVSPEGFATLENRLSREVCSDESDGLSRWSSSVFSVCSDSASVESALTTYLISEGSENVLDLSLSGLSLIKEDLHHSSPPSVLDGGMDDTLYDQLEQAMAEAENARRDAYQETVTSGIAQKNAIDAIRRAKASEVLYKEELRLRKELEEELEKAKEQLDNMRSIRDKVNEELRLALDQKSSLENQIESTELMIKELEEKMTSDADLLQNYKNELDDLKMQRDNALREAEELKSKQGEASSTHFLQLFSEFSFPEIKEATSNFDPSLKIGEGGYGSIFKGILCRTEVAIKTLDPKSKQGPSEFQQEVKILSKLRHPNIITLIGACPESWTLVYEYLPNGNLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHASKPHSIVHGDLKPSNILLDANLVSKLSDFGICRVLSCQESAANNTTQFWITDPKGSFVYMDPEFLSTCELTPKSDVYSFGIILLELLTGKPGLGLKKEVQCAFDAGKLKSLLDPLAGDWPFEQAEKLTRLALRCCEIDRKSRPELHSDVWRILEPIRASSGGTNTFGLGSQGVCQIPPYFICPILQEVMRDPHVAADGFSYEAEAIQEWLNNGNDTSPRTNSKLAHHNLVPNHAIRIAIQDWLQSH 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00009 866 ProSiteProfiles Protein kinase domain profile. 508 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00009 866 SUPERFAMILY RING/U-box 792 865 - -
Gabi4069g00009 866 Coils Coil 334 358 - -
Gabi4069g00009 866 Coils Coil 376 480 - -
Gabi4069g00009 866 Gene3D Phosphorylase Kinase; domain 1 493 580 - -
Gabi4069g00009 866 SUPERFAMILY Protein kinase-like (PK-like) 484 765 IPR011009 -
Gabi4069g00009 866 SMART Ubox_2 799 862 IPR003613 GO:0004842|GO:0016567
Gabi4069g00009 866 Gene3D Transferase(Phosphotransferase) domain 1 581 785 - -
Gabi4069g00009 866 Pfam Protein kinase domain 513 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00009 866 CDD RING-Ubox_WDSUB1-like 797 852 - -
Gabi4069g00009 866 ProSitePatterns Protein kinases ATP-binding region signature. 514 535 IPR017441 GO:0005524
Gabi4069g00009 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Gabi4069g00009 866 SMART serkin_6 508 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00009 866 FunFam receptor-like protein kinase FERONIA 471 580 - -
Gabi4069g00009 866 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 30 136 - -
Gabi4069g00009 866 Gene3D HUPs 20 147 IPR014729 -
Gabi4069g00009 866 CDD STKc_IRAK 514 776 - -
Gabi4069g00009 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 794 866 IPR013083 -
Gabi4069g00009 866 CDD STK_N 19 172 - -
Gabi4069g00009 866 ProSiteProfiles U-box domain profile. 795 866 IPR003613 GO:0004842|GO:0016567
Gabi4069g00009 866 PANTHER OS02G0152300 PROTEIN 20 861 - -
Gabi4069g00009 866 Pfam U-box domain 796 866 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00009 Gabi-Chr4069 167964 188091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00009 7 866 U-box Gene Family AT2G45910 51.047 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4069g00009 Pkinase 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00009 - - gmx:100781596 1182.93