Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00008 ATGACCACAGTGAGAGAAATTGTAGAGGAGCCCAATCCAATTGTGGTTAATGACATAATATATGTTGCTGTTGCAAAATATTTGAAAGATAGCAAATCAGCTCTGATATGGGCTATACAGAACTCTGGAGGAAAGAAGATTTGCGTTCTTCATGTTCATGTGCCAGCACCTATGATCCCCTTGCGTAAGTTTGCAACATTGGGTGCTAAATTTCCAGTAAGTGCACAGAAAGAGCAGGAAGTTCTAGCATACAGGGAAGTTGAAAGACAAGACATGCACAAGACTCTGGATGACTATGTTCTTACCTGTCAAAAAATGGGGGTGGTGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTCTAGAACTCATCTCCCAATATAACATACAGAATCTTGTAATGGGAGCAGCCACTGATAGGTACTATTCTAGGAGAATGACAGACATCAGATCTAAGAAAGCCATCTATGTATGTAAACAAGCTCCACCTTCTTGTAATATACAATATATCTGCAAAGGGAACCTTATACACACAAGGGATTGCATTTTGTATAGAGGTAATGTTGAGGTCATGTCTACTTTGGTGCATCAAATGCCAAATTCGGGTTCTATTACATCAACATCAACATCAATATCGCCAGTATCCCAAACTAGTCAGGGTCGGCAATCTCAATCTATTACATTTGGGCAAAATCATTGGGTGAAACTAACTAGTCCAGCTCAAATGTTAATAAGTAGAGTAAGGTCTATCAATGATAGATATGGAAGGAGCATTGCAGCTGTTTCTCCGGAAGGGTTTGCAACTCTAGAGAACAGGTTGAGTAGAGAAGTATGTTCTGATGAGTCAGATGGGTTATCAAGATGGAGTTCTTCAGTTTTCTCAGTGTGCTCTGATAGTGCTTCAGTTGAATCAGCATTGACCACATATTTGATTAGTGAAGGCAGTGAGAATGTGTTAGACTTGAGTTTGAGTGGCCTTTCTCTGATTAAAGAGGATCTTCATCACTCATCACCTCCTAGTGTATTGGATGGGGGAATGGATGATACTCTCTATGATCAACTTGAACAAGCTATGGCTGAGGCTGAGAATGCTAGGCGGGACGCATATCAAGAAACTGTTACGAGTGGGATAGCTCAAAAAAATGCCATTGATGCTATACGCAGGGCTAAAGCCAGTGAAGTCTTGTATAAAGAAGAGCTGAGACTAAGGAAAGAGTTGGAGGAAGAATTAGAGAAAGCAAAAGAACAACTTGATAATATGAGGAGCATAAGAGACAAAGTTAATGAGGAACTCCGACTTGCACTGGATCAGAAGTCATCACTGGAAAATCAAATTGAATCAACTGAACTTATGATAAAGGAGTTGGAGGAGAAAATGACATCTGATGCAGATCTATTACAAAACTACAAGAATGAACTAGATGATTTGAAAATGCAGCGAGATAATGCTTTGAGAGAGGCTGAGGAGTTAAAGAGTAAACAAGGAGAGGCCTCAAGCACACATTTTCTTCAACTCTTCTCAGAATTCTCTTTTCCAGAGATCAAAGAAGCAACAAGTAACTTCGATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCCTGTGTCGCACGGAGGTGGCTATAAAAACGTTGGACCCCAAGAGCAAGCAAGGACCCTCGGAGTTTCAACAGGAGGTTAAGATATTGAGCAAGTTAAGGCATCCCAATATTATCACACTTATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTACGAGTATCTACCCAATGGAAACCTTGAAGATCGTCTCAGCTGCAAGGATAATACACCTCCATTATCATGGCAAACTCGTATTCGCATTGCTGCAGAACTATGTTCTGCTCTCATTTTTCTCCATGCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATCCTCCTTGATGCAAACCTTGTTAGTAAGCTTAGCGATTTTGGAATCTGTCGTGTATTATCTTGTCAAGAGAGTGCTGCTAACAATACTACACAGTTTTGGATAACTGATCCAAAGGGATCTTTTGTCTACATGGATCCTGAATTCCTTTCTACATGTGAACTTACTCCAAAGTCAGATGTTTACTCTTTTGGAATCATACTATTAGAATTGTTGACTGGGAAACCAGGCTTGGGATTAAAAAAGGAAGTGCAGTGTGCATTCGATGCCGGAAAGTTGAAATCTCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTGAGCAAGCTGAGAAGTTGACTCGCTTGGCTTTGAGGTGTTGTGAGATTGATAGAAAGAGCAGGCCAGAACTTCATTCAGATGTTTGGAGGATACTTGAACCAATAAGGGCTTCTTCTGGAGGCACAAACACCTTTGGACTAGGTTCTCAAGGGGTCTGCCAAATTCCTCCATATTTTATTTGTCCAATCTTACAGGAAGTCATGAGAGATCCACATGTGGCTGCAGATGGTTTTTCTTATGAAGCTGAGGCTATACAAGAATGGCTAAACAATGGTAATGACACTTCACCAAGGACAAATTCTAAGCTTGCACATCACAATCTTGTTCCCAACCATGCTATTCGCATTGCAATCCAGGATTGGCTTCAAAGTCACTGA 2652 0.4091 MTTVREIVEEPNPIVVNDIIYVAVAKYLKDSKSALIWAIQNSGGKKICVLHVHVPAPMIPLRKFATLGAKFPVSAQKEQEVLAYREVERQDMHKTLDDYVLTCQKMGVVAEKLHIEMDCIEKGILELISQYNIQNLVMGAATDRYYSRRMTDIRSKKAIYVCKQAPPSCNIQYICKGNLIHTRDCILYRGNVEVMSTLVHQMPNSGSITSTSTSISPVSQTSQGRQSQSITFGQNHWVKLTSPAQMLISRVRSINDRYGRSIAAVSPEGFATLENRLSREVCSDESDGLSRWSSSVFSVCSDSASVESALTTYLISEGSENVLDLSLSGLSLIKEDLHHSSPPSVLDGGMDDTLYDQLEQAMAEAENARRDAYQETVTSGIAQKNAIDAIRRAKASEVLYKEELRLRKELEEELEKAKEQLDNMRSIRDKVNEELRLALDQKSSLENQIESTELMIKELEEKMTSDADLLQNYKNELDDLKMQRDNALREAEELKSKQGEASSTHFLQLFSEFSFPEIKEATSNFDPSLKIGEGGYGSIFKGILCRTEVAIKTLDPKSKQGPSEFQQEVKILSKLRHPNIITLIGACPESWTLVYEYLPNGNLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHASKPHSIVHGDLKPSNILLDANLVSKLSDFGICRVLSCQESAANNTTQFWITDPKGSFVYMDPEFLSTCELTPKSDVYSFGIILLELLTGKPGLGLKKEVQCAFDAGKLKSLLDPLAGDWPFEQAEKLTRLALRCCEIDRKSRPELHSDVWRILEPIRASSGGTNTFGLGSQGVCQIPPYFICPILQEVMRDPHVAADGFSYEAEAIQEWLNNGNDTSPRTNSKLAHHNLVPNHAIRIAIQDWLQSH 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00008 883 SUPERFAMILY RING/U-box 809 882 - -
Gabi4069g00008 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 883 IPR013083 -
Gabi4069g00008 883 ProSiteProfiles U-box domain profile. 812 883 IPR003613 GO:0004842|GO:0016567
Gabi4069g00008 883 SUPERFAMILY Protein kinase-like (PK-like) 501 782 IPR011009 -
Gabi4069g00008 883 Gene3D Phosphorylase Kinase; domain 1 510 597 - -
Gabi4069g00008 883 ProSiteProfiles Protein kinase domain profile. 525 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00008 883 PANTHER OS02G0152300 PROTEIN 20 878 - -
Gabi4069g00008 883 Pfam Protein kinase domain 530 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00008 883 CDD STKc_IRAK 531 793 - -
Gabi4069g00008 883 Gene3D Transferase(Phosphotransferase) domain 1 598 802 - -
Gabi4069g00008 883 Pfam U-box domain 813 883 IPR003613 GO:0004842|GO:0016567
Gabi4069g00008 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Gabi4069g00008 883 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 30 142 - -
Gabi4069g00008 883 FunFam receptor-like protein kinase FERONIA 488 597 - -
Gabi4069g00008 883 CDD RING-Ubox_WDSUB1-like 814 869 - -
Gabi4069g00008 883 Coils Coil 351 375 - -
Gabi4069g00008 883 SMART Ubox_2 816 879 IPR003613 GO:0004842|GO:0016567
Gabi4069g00008 883 Coils Coil 393 497 - -
Gabi4069g00008 883 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
Gabi4069g00008 883 CDD STK_N 19 177 - -
Gabi4069g00008 883 SMART serkin_6 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00008 Gabi-Chr4069 167964 188091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00008 349 883 U-box Gene Family AT2G45910 57.944 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4069g00008 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00008 - - gmx:100781596 1167.91