Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00007 ATGGCTGTGGTGTGTCCTATGTTTGCAAGTCCACACAGCTTCAGTTCTGTGAACTCGTTTAGGGATATTGGGGGAGAAATTGTAGAGGAGCCCAATCCAATTGTGGTTAATGACACAATATATGTTGCTGTGGCAAAAAATTTGAAAGATAGCAAATCAACTCTGTTATGGGCTATACAGAACACTGGAGGAAAGAAGATTTGCATTCTTCATGTTCATGTGCCAGCATCTATGATCCCCTTGTTGGGTGCTAAATTTCCAGTAAGTGCACTGAAAGAGCAGGAAGTTCTAGCATACAGGGAAATTGAAAGACAAGACATGCACAAGACTCTGGATGACTATGTTCTTACCTGTCAAAAAATGGGGGTGGTGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTCTAGAACTCATCTCCCAATATAACATACAGAATCTTGTAATGGGAGCAGCCACTGATAGGTACTATTCTAGGAAAATGACAGACATCAGATCTAAGAAAGCCATCTATGTATGTAAACAAGCTCCACCTTCTTGTAATATACAATATATCTGCAAAGGGAACCTTATACACACCAGGGATTGCAGTTTGTATAGTGGTAATGTTGAGGTCATGTCTCCTTTGGTGCATCAAATGCCAAATTCGGAATCTCAATCTATTACATCAACACCAACATCACCAGTATCCCAAACTAGTCGGGGTCGGCGGTCTCAATCTATTGCGGTTGGGCAAAATCATTGGGTATTACTAGCTAGTCCAGCTCAAATGTTATTGCGTAGAGTAAGGTCTATCAATGATAGATATGGAAGAAGGAGCAATGCAGCTGTTTCTCCGGAAGGGTTAGCAACTCCAGAGAACAGGTTGAGTTATGATGAGTCAGATGAGTTATCAAGATGGAGTTCTTCAGTTTTCTCAGTGTGCTCTGATAGTGCTTCAGTTGAACCAGTAATGACCCCAAATTTGATTAGTGAAGGCAGTGAGAATGTGTTAGACTTGAGTTTGAGTGGTCTTTCTATGATTAAAGAGGATCTTCATCATTCATCTTCATCACCTCCTAGTGTACTGGATGGGGGAATGGATGATACTCTCTATGATCAACTTGAACAGGCTATGGCTGAGGCTGAGATTGCTAGGCTGGACGCATATCAAGAAACTGTTAGGAGGGGGATAGCTCAAAAAGATGCCATTGATGCTATACGCAGGGCTAAGGCCAGTGAAGTCTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAGTTGGAGGAAGAATTAGAGAAAGCAAAAGAACAAATTGATAATATGAAGAGCATAAGAGACAAAGTTATTGAGGAACACCAACTTGCACTAGATCAGAAGTCATCACTAGAAAATCAAATTGCATCAACTGAACTTATGATAAAGGACTTGGAGGAGAAAATGACATCTGATGCAGACCTATTACAAAACTACAAGAATGAACTAGATGATTTGAAAATGCAGCGAGATAATGCTTTGAGAGAGGCTGAGGAGTTAAAGAGAAAACAAGGAGAGGCCTCGAGCACACATTTTCTTCAACTCTTCTCAGAATTCTCTTTTCCAGAGATCAAAGAAGCAACAAGTAACTTCGATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCCTGCGTCACACTGAGGTGGCTATAAAAGCGTTGAACCCCAAGAGCAAGCAAGGACCCTCGGAGTTTCAGCAGGAGGTTGAGATATTGAGTAAGTTAAGGCATCCCAATATTATCACACTTATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTACGAGTATCTACCCAATGGAAACCTTGAAGATCGTCTCAGCTGCAAGGATAATACACCTCCATTATCATGGCAAACTCGTATTCGCATTGCTGCAGAACTATGTTCTGCTCTCATTTTTCTCCATGCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATCCTCCTTGATGCAAACCTTGTTAGTAAGCTTAGCGATTTTGGAATCTGTCGTGTATTATCTTGTCAAGAGAGTGCTGCTAACAATACTACACAGTTTTGGATAACTGATCCAAAGGGATCTTTTGTCTACATGGATCCTGAATTCCTTTCTACATGTGAACTTACTCCAAAGTCAGATGTTTACTCTTTTGGAATCATACTATTAGAATTGTTGACTGGGAAACCAGGCTTGGGATTAAAAAAGGAAGTGCAGTGTGCATTCGATGCCGGAAAGTTGAAATCTCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTGAGCAAGCTGAGCAGTTGACTCGCTTGGCTTTGAGGTGTTGTGAGATTGATAGAAAGAGCAGGCCAGAACTTCATTCAGATGTTTGGAGGATACTTGAACCAATAAGGGCTTCTTCTGGAGGCACAAACACCTTTGGACTAGGTTCTCAAGGGGTCTGCCAAATTCCTCCATATTTTATTTGTCCAATCTTACAGGAAGTCATGAGAGATCCACATGTGGCTGCAGATGGTTTTTCTTATGAAGCTGAGGCTATACAAGAATGGCTGAACAATGGTAATGACACTTCACCAAGGACAAATGCTAAGCTTGAACATCAGAATGTTGTTCCCAACCATGCTATTCGCATTGCAATCCAGGATTGGCTTCAAAGTCTCTGA 2694 0.4139 MAVVCPMFASPHSFSSVNSFRDIGGEIVEEPNPIVVNDTIYVAVAKNLKDSKSTLLWAIQNTGGKKICILHVHVPASMIPLLGAKFPVSALKEQEVLAYREIERQDMHKTLDDYVLTCQKMGVVAEKLHIEMDCIEKGILELISQYNIQNLVMGAATDRYYSRKMTDIRSKKAIYVCKQAPPSCNIQYICKGNLIHTRDCSLYSGNVEVMSPLVHQMPNSESQSITSTPTSPVSQTSRGRRSQSIAVGQNHWVLLASPAQMLLRRVRSINDRYGRRSNAAVSPEGLATPENRLSYDESDELSRWSSSVFSVCSDSASVEPVMTPNLISEGSENVLDLSLSGLSMIKEDLHHSSSSPPSVLDGGMDDTLYDQLEQAMAEAEIARLDAYQETVRRGIAQKDAIDAIRRAKASEVLYKEELKLRKELEEELEKAKEQIDNMKSIRDKVIEEHQLALDQKSSLENQIASTELMIKDLEEKMTSDADLLQNYKNELDDLKMQRDNALREAEELKRKQGEASSTHFLQLFSEFSFPEIKEATSNFDPSLKIGEGGYGSIFKGILRHTEVAIKALNPKSKQGPSEFQQEVEILSKLRHPNIITLIGACPESWTLVYEYLPNGNLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHASKPHSIVHGDLKPSNILLDANLVSKLSDFGICRVLSCQESAANNTTQFWITDPKGSFVYMDPEFLSTCELTPKSDVYSFGIILLELLTGKPGLGLKKEVQCAFDAGKLKSLLDPLAGDWPFEQAEQLTRLALRCCEIDRKSRPELHSDVWRILEPIRASSGGTNTFGLGSQGVCQIPPYFICPILQEVMRDPHVAADGFSYEAEAIQEWLNNGNDTSPRTNAKLEHQNVVPNHAIRIAIQDWLQSL 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00007 897 ProSiteProfiles U-box domain profile. 826 897 IPR003613 GO:0004842|GO:0016567
Gabi4069g00007 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 825 897 IPR013083 -
Gabi4069g00007 897 CDD STKc_IRAK 545 807 - -
Gabi4069g00007 897 SMART serkin_6 539 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00007 897 SUPERFAMILY Protein kinase-like (PK-like) 515 796 IPR011009 -
Gabi4069g00007 897 CDD STK_N 39 192 - -
Gabi4069g00007 897 SUPERFAMILY RING/U-box 823 895 - -
Gabi4069g00007 897 CDD RING-Ubox_WDSUB1-like 828 883 - -
Gabi4069g00007 897 MobiDBLite consensus disorder prediction 218 241 - -
Gabi4069g00007 897 ProSiteProfiles Protein kinase domain profile. 539 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00007 897 SMART Ubox_2 830 893 IPR003613 GO:0004842|GO:0016567
Gabi4069g00007 897 Gene3D Phosphorylase Kinase; domain 1 524 611 - -
Gabi4069g00007 897 Pfam U-box domain 827 895 IPR003613 GO:0004842|GO:0016567
Gabi4069g00007 897 Coils Coil 407 518 - -
Gabi4069g00007 897 FunFam receptor-like protein kinase FERONIA 502 611 - -
Gabi4069g00007 897 ProSitePatterns Protein kinases ATP-binding region signature. 545 566 IPR017441 GO:0005524
Gabi4069g00007 897 PANTHER OS02G0152300 PROTEIN 40 892 - -
Gabi4069g00007 897 Pfam Protein kinase domain 544 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00007 897 Coils Coil 369 389 - -
Gabi4069g00007 897 Gene3D Transferase(Phosphotransferase) domain 1 612 816 - -
Gabi4069g00007 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00007 Gabi-Chr4069 155874 163686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00007 27 895 U-box Gene Family AT2G45910 48.851 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4069g00007 Pkinase 8.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00007 - - gmx:100781596 1177.54