Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00006 ATGGCTGTGGTGTGTCCTATGTTTGCAAGTCCACACAGCTTCAGTTCTGTGAACTCGTTTAGGGATATTGGGGTCCCTGAAGTCATGACCACAGTGAGAGAAATTGTAGAGGAGCCCAATCCAATTGGGGTCCCTGAAATCATGACCACAGTGAGAGAAATTGTAGAGGAGCCCAATCCAATTGTGGTTAATGACACAATATATGTTGCTGTGGCAAAAAATTTGAAAGATAGCAAATCAACTCTGTTATGGGCTATACAGAACACTGGAGGAAAGAAGATTTGCATTCTTCATGTTCATGTGCCAGCATCTATGATCCCCTTGTTGGGTGCTAAATTTCCAGTAAGTGCACTGAAAGAGCAGGAAGTTCTAGCATACAGGGAAATTGAAAGACAAGACATGCACAAGACTCTGGATGACTATGTTCTTACCTGTCAAAAAATGGGGGTGGTGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTCTAGAACTCATCTCCCAATATAACATACAGAATCTTGTAATGGGAGCAGCCACTGATAGGTACTATTCTAGGAAAATGACAGACATCAGATCTAAGAAAGCCATCTATGTATGTAAACAAGCTCCACCTTCTTGTAATATACAATATATCTGCAAAGGGAACCTTATACACACCAGGGATTGCAGTTTGTATAGTGGTAATGTTGAGGTCATGTCTCCTTTGGTGCATCAAATGCCAAATTCGGAATCTCAATCTATTACATCAACACCAACATCACCAGTATCCCAAACTAGTCGGGGTCGGCGGTCTCAATCTATTGCGGTTGGGCAAAATCATTGGGTATTACTAGCTAGTCCAGCTCAAATGTTATTGCGTAGAGTAAGGTCTATCAATGATAGATATGGAAGAAGGAGCAATGCAGCTGTTTCTCCGGAAGGGTTAGCAACTCCAGAGAACAGGTTGAGTTATGATGAGTCAGATGAGTTATCAAGATGGAGTTCTTCAGTTTTCTCAGTGTGCTCTGATAGTGCTTCAGTTGAACCAGTAATGACCCCAAATTTGATTAGTGAAGGCAGTGAGAATGTGTTAGACTTGAGTTTGAGTGGTCTTTCTATGATTAAAGAGGATCTTCATCATTCATCTTCATCACCTCCTAGTGTACTGGATGGGGGAATGGATGATACTCTCTATGATCAACTTGAACAGGCTATGGCTGAGGCTGAGATTGCTAGGCTGGACGCATATCAAGAAACTGTTAGGAGGGGGATAGCTCAAAAAGATGCCATTGATGCTATACGCAGGGCTAAGGCCAGTGAAGTCTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAGTTGGAGGAAGAATTAGAGAAAGCAAAAGAACAAATTGATAATATGAAGAGCATAAGAGACAAAGTTATTGAGGAACACCAACTTGCACTAGATCAGAAGTCATCACTAGAAAATCAAATTGCATCAACTGAACTTATGATAAAGGACTTGGAGGAGAAAATGACATCTGATGCAGACCTATTACAAAACTACAAGAATGAACTAGATGATTTGAAAATGCAGCGAGATAATGCTTTGAGAGAGGCTGAGGAGTTAAAGAGAAAACAAGGAGAGGCCTCGAGCACACATTTTCTTCAACTCTTCTCAGAATTCTCTTTTCCAGAGATCAAAGAAGCAACAAGTAACTTCGATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCCTGCGTCACACTGAGGTGGCTATAAAAGCGTTGAACCCCAAGAGCAAGCAAGGACCCTCGGAGTTTCAGCAGGAGGTTGAGATATTGAGTAAGTTAAGGCATCCCAATATTATCACACTTATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTACGAGTATCTACCCAATGGAAACCTTGAAGATCGTCTCAGCTGCAAGGATAATACACCTCCATTATCATGGCAAACTCGTATTCGCATTGCTGCAGAACTATGTTCTGCTCTCATTTTTCTCCATGCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATCCTCCTTGATGCAAACCTTGTTAGTAAGCTTAGCGATTTTGGAATCTGTCGTGTATTATCTTGTCAAGAGAGTGCTGCTAACAATACTACACAGTTTTGGATAACTGATCCAAAGGGATCTTTTGTCTACATGGATCCTGAATTCCTTTCTACATGTGAACTTACTCCAAAGTCAGATGTTTACTCTTTTGGAATCATACTATTAGAATTGTTGACTGGGAAACCAGGCTTGGGATTAAAAAAGGAAGTGCAGTGTGCATTCGATGCCGGAAAGTTGAAATCTCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTGAGCAAGCTGAGCAGTTGACTCGCTTGGCTTTGAGGTGTTGTGAGATTGATAGAAAGAGCAGGCCAGAACTTCATTCAGATGTTTGGAGGATACTTGAACCAATAAGGGCTTCTTCTGGAGGCACAAACACCTTTGGACTAGGTTCTCAAGGGGTCTGCCAAATTCCTCCATATTTTATTTGTCCAATCTTACAGGAAGTCATGAGAGATCCACATGTGGCTGCAGATGGTTTTTCTTATGAAGCTGAGGCTATACAAGAATGGCTGAACAATGGTAATGACACTTCACCAAGGACAAATGCTAAGCTTGAACATCAGAATGTTGTTCCCAACCATGCTATTCGCATTGCAATCCAGGATTGGCTTCAAAGTCTCTGA 2775 0.4159 MAVVCPMFASPHSFSSVNSFRDIGVPEVMTTVREIVEEPNPIGVPEIMTTVREIVEEPNPIVVNDTIYVAVAKNLKDSKSTLLWAIQNTGGKKICILHVHVPASMIPLLGAKFPVSALKEQEVLAYREIERQDMHKTLDDYVLTCQKMGVVAEKLHIEMDCIEKGILELISQYNIQNLVMGAATDRYYSRKMTDIRSKKAIYVCKQAPPSCNIQYICKGNLIHTRDCSLYSGNVEVMSPLVHQMPNSESQSITSTPTSPVSQTSRGRRSQSIAVGQNHWVLLASPAQMLLRRVRSINDRYGRRSNAAVSPEGLATPENRLSYDESDELSRWSSSVFSVCSDSASVEPVMTPNLISEGSENVLDLSLSGLSMIKEDLHHSSSSPPSVLDGGMDDTLYDQLEQAMAEAEIARLDAYQETVRRGIAQKDAIDAIRRAKASEVLYKEELKLRKELEEELEKAKEQIDNMKSIRDKVIEEHQLALDQKSSLENQIASTELMIKDLEEKMTSDADLLQNYKNELDDLKMQRDNALREAEELKRKQGEASSTHFLQLFSEFSFPEIKEATSNFDPSLKIGEGGYGSIFKGILRHTEVAIKALNPKSKQGPSEFQQEVEILSKLRHPNIITLIGACPESWTLVYEYLPNGNLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHASKPHSIVHGDLKPSNILLDANLVSKLSDFGICRVLSCQESAANNTTQFWITDPKGSFVYMDPEFLSTCELTPKSDVYSFGIILLELLTGKPGLGLKKEVQCAFDAGKLKSLLDPLAGDWPFEQAEQLTRLALRCCEIDRKSRPELHSDVWRILEPIRASSGGTNTFGLGSQGVCQIPPYFICPILQEVMRDPHVAADGFSYEAEAIQEWLNNGNDTSPRTNAKLEHQNVVPNHAIRIAIQDWLQSL 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00006 924 SMART serkin_6 566 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00006 924 ProSiteProfiles U-box domain profile. 853 924 IPR003613 GO:0004842|GO:0016567
Gabi4069g00006 924 ProSitePatterns Protein kinases ATP-binding region signature. 572 593 IPR017441 GO:0005524
Gabi4069g00006 924 PANTHER OS02G0152300 PROTEIN 67 919 - -
Gabi4069g00006 924 Gene3D Transferase(Phosphotransferase) domain 1 639 843 - -
Gabi4069g00006 924 Pfam Protein kinase domain 571 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00006 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
Gabi4069g00006 924 Coils Coil 434 545 - -
Gabi4069g00006 924 Coils Coil 396 416 - -
Gabi4069g00006 924 CDD STKc_IRAK 572 834 - -
Gabi4069g00006 924 CDD STK_N 66 219 - -
Gabi4069g00006 924 Gene3D Phosphorylase Kinase; domain 1 551 638 - -
Gabi4069g00006 924 SMART Ubox_2 857 920 IPR003613 GO:0004842|GO:0016567
Gabi4069g00006 924 CDD RING-Ubox_WDSUB1-like 855 910 - -
Gabi4069g00006 924 ProSiteProfiles Protein kinase domain profile. 566 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00006 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 852 924 IPR013083 -
Gabi4069g00006 924 MobiDBLite consensus disorder prediction 245 268 - -
Gabi4069g00006 924 FunFam receptor-like protein kinase FERONIA 529 638 - -
Gabi4069g00006 924 SUPERFAMILY Protein kinase-like (PK-like) 542 823 IPR011009 -
Gabi4069g00006 924 Pfam U-box domain 854 922 IPR003613 GO:0004842|GO:0016567
Gabi4069g00006 924 SUPERFAMILY RING/U-box 850 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00006 Gabi-Chr4069 155874 163686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00006 54 922 U-box Gene Family AT2G45910 48.851 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4069g00006 Pkinase 9.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00006 - - gmx:100781596 1184.09