Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4069g00005 ATGGCTGTGGTGTGTCCTATGTTTGCAAGTCCACACAGCTTCAGTTCTGTGAACTCGTTTAGGGATATTGGGGTCCCTGAAGTCATGACCACAGTGAGAGAAATTGTAGAGGAGCCCAATCCAATTGGGGTCCCTGAAATCATGACCACAGTGAGAGAAATTGTAGAGGAGCCCAATCCAATTGTGGTTAATGACACAATATATGTTGCTGTGGCAAAAAATTTGAAAGATAGCAAATCAACTCTGTTATGGGCTATACAGAACACTGGAGGAAAGAAGATTTGCATTCTTCATGTTCATGTGCCAGCATCTATGATCCCCTTGTTGGGTGCTAAATTTCCAGTAAGTGCACTGAAAGAGCAGGAAGTTCTAGCATACAGGGAAATTGAAAGACAAGACATGCACAAGACTCTGGATGACTATGTTCTTACCTGTCAAAAAATGGGGGTGGTGGCAGAGAAACTGCACATTGAAATGGATTGCATTGAAAAAGGAATTCTAGAACTCATCTCCCAATATAACATACAGAATCTTGTAATGGGAGCAGCCACTGATAGGTACTATTCTAGGAAAATGACAGACATCAGATCTAAGAAAGCCATCTATGTATGTAAACAAGCTCCACCTTCTTGTAATATACAATATATCTGCAAAGGGAACCTTATACACACCAGGGATTGCAGTTTGTATAGTGGTAATGTTGAGGTCATGTCTCCTTTGGTGCATCAAATGCCAAATTCGGAATCTCAATCTATTACATCAACACCAACATCACCAGTATCCCAAACTAGTCGGGGTCGGCGGTCTCAATCTATTGCGGTTGGGCAAAATCATTGGGTATTACTAGCTAGTCCAGCTCAAATGTTATTGCGTAGAGTAAGGTCTATCAATGATAGATATGGAAGAAGGAGCAATGCAGCTGTTTCTCCGGAAGGGTTAGCAACTCCAGAGAACAGGTTGAGTTATGATGAGTCAGATGAGTTATCAAGATGGAGTTCTTCAGTTTTCTCAGTGTGCTCTGATAGTGCTTCAGTTGAACCAGTAATGACCCCAAATTTGATTAGTGAAGGCAGTGAGAATGTGTTAGACTTGAGTTTGAGTGGTCTTTCTATGATTAAAGAGGATCTTCATCATTCATCTTCATCACCTCCTAGTGTACTGCAGGATGGGGGAATGGATGATACTCTCTATGATCAACTTGAACAGGCTATGGCTGAGGCTGAGATTGCTAGGCTGGACGCATATCAAGAAACTGTTAGGAGGGGGATAGCTCAAAAAGATGCCATTGATGCTATACGCAGGGCTAAGGCCAGTGAAGTCTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAGTTGGAGGAAGAATTAGAGAAAGCAAAAGAACAAATTGATAATATGAAGAGCATAAGAGACAAAGTTATTGAGGAACACCAACTTGCACTAGATCAGAAGTCATCACTAGAAAATCAAATTGCATCAACTGAACTTATGATAAAGGACTTGGAGGAGAAAATGACATCTGATGCAGACCTATTACAAAACTACAAGAATGAACTAGATGATTTGAAAATGCAGCGAGATAATGCTTTGAGAGAGGCTGAGGAGTTAAAGAGAAAACAAGGAGAGGCCTCGAGCACACATTTTCTTCAACTCTTCTCAGAATTCTCTTTTCCAGAGATCAAAGAAGCAACAAGTAACTTCGATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCCTGCGTCACACTGAGGTGGCTATAAAAGCGTTGAACCCCAAGAGCAAGCAAGGACCCTCGGAGTTTCAGCAGGAGGTTGAGATATTGAGTAAGTTAAGGCATCCCAATATTATCACACTTATAGGAGCCTGCCCAGAATCATGGACTCTTGTCTACGAGTATCTACCCAATGGAAACCTTGAAGATCGTCTCAGCTGCAAGGATAATACACCTCCATTATCATGGCAAACTCGTATTCGCATTGCTGCAGAACTATGTTCTGCTCTCATTTTTCTCCATGCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATCCTCCTTGATGCAAACCTTGTTAGTAAGCTTAGCGATTTTGGAATCTGTCGTGTATTATCTTGTCAAGAGAGTGCTGCTAACAATACTACACAGTTTTGGATAACTGATCCAAAGGGATCTTTTGTCTACATGGATCCTGAATTCCTTTCTACATGTGAACTTACTCCAAAGTCAGATGTTTACTCTTTTGGAATCATACTATTAGAATTGTTGACTGGGAAACCAGGCTTGGGATTAAAAAAGGAAGTGCAGTGTGCATTCGATGCCGGAAAGTTGAAATCTCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTGAGCAAGCTGAGCAGTTGACTCGCTTGGCTTTGAGGTGTTGTGAGATTGATAGAAAGAGCAGGCCAGAACTTCATTCAGATGTTTGGAGGATACTTGAACCAATAAGGGCTTCTTCTGGAGGCACAAACACCTTTGGACTAGGTTCTCAAGGGGTCTGCCAAATTCCTCCATATTTTATTTGTCCAATCTTACAGGAAGTCATGAGAGATCCACATGTGGCTGCAGATGGTTTTTCTTATGAAGCTGAGGCTATACAAGAATGGCTGAACAATGGTAATGACACTTCACCAAGGACAAATGCTAAGCTTGAACATCAGAATGTTGTTCCCAACCATGCTATTCGCATTGCAATCCAGGATTGGCTTCAAAGTCTCTGA 2778 0.4161 MAVVCPMFASPHSFSSVNSFRDIGVPEVMTTVREIVEEPNPIGVPEIMTTVREIVEEPNPIVVNDTIYVAVAKNLKDSKSTLLWAIQNTGGKKICILHVHVPASMIPLLGAKFPVSALKEQEVLAYREIERQDMHKTLDDYVLTCQKMGVVAEKLHIEMDCIEKGILELISQYNIQNLVMGAATDRYYSRKMTDIRSKKAIYVCKQAPPSCNIQYICKGNLIHTRDCSLYSGNVEVMSPLVHQMPNSESQSITSTPTSPVSQTSRGRRSQSIAVGQNHWVLLASPAQMLLRRVRSINDRYGRRSNAAVSPEGLATPENRLSYDESDELSRWSSSVFSVCSDSASVEPVMTPNLISEGSENVLDLSLSGLSMIKEDLHHSSSSPPSVLQDGGMDDTLYDQLEQAMAEAEIARLDAYQETVRRGIAQKDAIDAIRRAKASEVLYKEELKLRKELEEELEKAKEQIDNMKSIRDKVIEEHQLALDQKSSLENQIASTELMIKDLEEKMTSDADLLQNYKNELDDLKMQRDNALREAEELKRKQGEASSTHFLQLFSEFSFPEIKEATSNFDPSLKIGEGGYGSIFKGILRHTEVAIKALNPKSKQGPSEFQQEVEILSKLRHPNIITLIGACPESWTLVYEYLPNGNLEDRLSCKDNTPPLSWQTRIRIAAELCSALIFLHASKPHSIVHGDLKPSNILLDANLVSKLSDFGICRVLSCQESAANNTTQFWITDPKGSFVYMDPEFLSTCELTPKSDVYSFGIILLELLTGKPGLGLKKEVQCAFDAGKLKSLLDPLAGDWPFEQAEQLTRLALRCCEIDRKSRPELHSDVWRILEPIRASSGGTNTFGLGSQGVCQIPPYFICPILQEVMRDPHVAADGFSYEAEAIQEWLNNGNDTSPRTNAKLEHQNVVPNHAIRIAIQDWLQSL 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4069g00005 925 Coils Coil 435 546 - -
Gabi4069g00005 925 Coils Coil 397 417 - -
Gabi4069g00005 925 Gene3D Transferase(Phosphotransferase) domain 1 640 844 - -
Gabi4069g00005 925 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 853 925 IPR013083 -
Gabi4069g00005 925 PANTHER OS02G0152300 PROTEIN 67 920 - -
Gabi4069g00005 925 Pfam U-box domain 855 923 IPR003613 GO:0004842|GO:0016567
Gabi4069g00005 925 CDD STKc_IRAK 573 835 - -
Gabi4069g00005 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 685 697 IPR008271 GO:0004672|GO:0006468
Gabi4069g00005 925 SMART Ubox_2 858 921 IPR003613 GO:0004842|GO:0016567
Gabi4069g00005 925 ProSitePatterns Protein kinases ATP-binding region signature. 573 594 IPR017441 GO:0005524
Gabi4069g00005 925 CDD STK_N 66 219 - -
Gabi4069g00005 925 Gene3D Phosphorylase Kinase; domain 1 552 639 - -
Gabi4069g00005 925 FunFam receptor-like protein kinase FERONIA 530 639 - -
Gabi4069g00005 925 ProSiteProfiles Protein kinase domain profile. 567 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00005 925 MobiDBLite consensus disorder prediction 245 268 - -
Gabi4069g00005 925 SUPERFAMILY Protein kinase-like (PK-like) 543 824 IPR011009 -
Gabi4069g00005 925 CDD RING-Ubox_WDSUB1-like 856 911 - -
Gabi4069g00005 925 ProSiteProfiles U-box domain profile. 854 925 IPR003613 GO:0004842|GO:0016567
Gabi4069g00005 925 Pfam Protein kinase domain 572 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00005 925 SMART serkin_6 567 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4069g00005 925 SUPERFAMILY RING/U-box 851 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4069g00005 Gabi-Chr4069 155874 163686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4069g00005 54 923 U-box Gene Family AT2G45910 48.909 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4069g00005 Pkinase 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4069g00005 - - gmx:100781596 1186.4